MpVg00600



Description

Annotation

Database ID Description
NCBIfam TIGR00229 PAS domain S-box protein
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR47429 PROTEIN TWIN LOV 1
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain)
CDD cd00130 PAS
Gene3D G3DSA:3.30.450.20 PAS domain
ProSiteProfiles PS50112 PAS repeat profile.
SMART SM00086 pac_2
ProSiteProfiles PS50113 PAC domain profile.
Pfam PF13426 PAS domain
KOG KOG0501 K+-channel KCNQ; C-term missing; [P]
MapolyID MapolyY_A0056 -
GO GO:0005634 nucleus

Nomenclature

Gene symbol Product Transcript ID Status
MpLOVV LOV domain-containing protein Published

Transcript models

Transcript ID Location Sequences Extract region
MpVg00600.1 chrV:4148742..4168192 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of MpVg00600 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of MpVg00600 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.