Mp1g00960
Description
Annotation
| Database | ID | Description |
|---|---|---|
| CDD | cd00195 | UBCc |
| FunFam | G3DSA:3.10.110.10:FF:000044 | protein PEROXIN-4 isoform X1 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme |
| KEGG | K10689 | peroxin-4 [EC:2.3.2.23] |
| KOG | KOG0417 | Ubiquitin-protein ligase; [O] |
| PANTHER | PTHR24067 | UBIQUITIN-CONJUGATING ENZYME E2 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. |
| SMART | SM00212 | ubc_7 |
| SUPERFAMILY | SSF54495 | UBC-like |
| MapolyID | Mapoly0029s0150 | - |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpPEX4 | PEX4, E2 ligase | Published |
Associated Literature (AI-based literature mining)
PEX4, E2 ligase; E2 ligase (from nomenclature)
0 core 1 peripheral
Goto-Yamada, S., et al. (2022)
· Frontiers in Cell and Developmental Biology review citation background
M. polymorpha PEX4 (peroxin/peroxisome biogenesis)
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp1g00960 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp1g00960.1 TTTGCTAGGA CATTTGCTAC TGTTGTGAAA AATGCAGAAG ATTCTGTCGA ATAAGTTCCT TCCTTCCGAA TGTTGCAACT TTGCGTCCGT CTTCTTCTCA TGATACGAGG CTTAGGCTTG TGAAAGAGAC ACTCAAACAT TGCACAATGT TAGTCTTTGA AGAAGAAGAG CAATACAATG CTGCTCTACT CGCGTGCTGA AATTTTGCGA ATTAATTGCG ATATTCACAG CAGCAGCATG AGTCCATTGA TTTGAGTTAT CAGAGAGGCA TTAGTGGTCG GATCCAGCGC ACGGTCGCAG CAGTTGCCTC GAGTGATCTG CAATCATCGC GAATTGTTGT CGATAGTGAA TTCCATTTTC CACGCGTCTG TCTGGATTTC CCGCACAATC CACCCGATCG TGATATTGAG AAGGCCGAGG AAAATCACTT TGTTCGGATA GAATAAGACA GTGCAATCTT ATGGTATGAC TCCTTGAATT AGGTCTGGAA ATTCCGCGTA TATCGTTGTT TCGATTGGGA GCTAATGGGA TTCTCGTATG CTTTGTCTTT AGATCATTTC AGTCTGTCAT ATGTGATATG CTCGCTTGCA TAGCAGTTTG ATCTTCCTGT TTTTTTGAAA TTTGCTCTGG ATATATGTAG ATGACCTTCT ACTTGTATGA CCCTAGGATC AGATGCTACA ATAGATTACG TTTGAGATAG ATTGGATGCA GTTGTCGTGC GACACCTTCT CTGATCTACT GAAATTGCTA GGTTTTAGAT CGGATTACGG TGAGAGCCTG CTGTTAGATG ATAAAAGTAG ACAATTTGAT TAATAGGTCA CCTTCCCCTT ACCAGTATAA TGTGTTCTAA CTGTCATCTA ACGGAGTCAA ATGATCTTGC CGGTTGAATC TAATCGGCAG GCATCAAGGG CAAGACTGTT CAAAGAGTAC AAAGAAGTAC AAAGAGACAG AGGGCAGGAT TCGGATATTC AGCTTCTTTG TGACGAAACA AACATTTATC GTTGGACTGC ACTGATTAAG GTATATTTTA CAACTATCGC GTCATCCAAG AGTGTGTGCC AAATGCGATT GATCCAAACA ACGTGCTGTT TGGAACAAAT TTTAATTGTA GATTTCACGC ATGATTTCTT GTTTATTAAA GCTTGGTAAC CTGTTCATTA TGATCCTGAA ACAGGGACCA ACAGATACTC CTTACCAAGA AGGTGTTTTT CAGCTTGCCA TTAATGTGCC GGAACAATAT CCTCTAGTAC CACCACAAGT TCGTTTCGTG ACAAAGATAT TTCACCCAAA TGTTCACTTC AAGGTAAATT AGTGACTTTC CAACCTTCTA CAGACTTTAT TTGTGAAGAC CATGCATGTT CCCAACTCAG TGCATGTACA AGTTCTGTGT CTTAAATGCT GCTGCCCCTG GTTCTGGACC GAGTAAATTT TGTGATTTAT TTGGTACTAT CGGTTACTCC TTGTGCTTTC TTCTGTATCG TGCATTTGCA TTCCTTTTGG GAACAACACT CAGGAATCTT CTTAGCCTGT GATATTCACC CTTATTAATA TCAAAGCCTT TTGGCACTTT TGGTACACGG ATCACAAAAG CAATAGAGAC TTAATCAGAG ATATAATGAT AGGTGTTCAG GTTATTTCAT TTTAAAAGTT TCTAAGCAGT GTGAGGGATG TCTGCAGACC GGCGAGATTT GTTTGGACAT ATTGAAGACA GCTTGGAGTC CGGCATGGAC ACTGCAGTCA GTTTGCCGTG CTGTTATTGC ACTGTTGGCA CATCCAGAGG CCGACAGTCC TCTCAATTGC GACTGCGGTA AACGCTTCTT TCTCCACGTT CCAACTTTGA AATAATTGAT TATCTCACCA AGTACTAGTA GGTGGAAAAT CTGTTCATGA AGAATGTAGG AAGTTTCTAC ATAAAGAAAA CATTGTTATA ATTATACAAG GAGCGAGGAA TGGAAGAACT TTGTAAGAAT TTTTATATCA TGGGAGACTC TCTTCATATC ATCTAGTCAT TACCTCATCT AGCTCTCACG TATCCTTTCT TCTTCCTCTT CCCCGTCTTC TAACTAGCAG CGTTCAATCA GGATGCGGGG TCGATAGTGT TCAGGCTGTG AAAAGCATAT CCTTACAAGT GCAGTTGTTT TCCCTTACAG GAAACTTGTT ACGATCGGGG GACAATCGGG GTTATCAGTC TATGGCTTTG ATGTACACAA GGCTAGCAGC TGTGGCATCC GTGCCAAACA GTTCTGCCTA AGACAACCAT CCACTGCAAT CGGCCGTCCC TGTACATCAC AGATTGTCGA CCTCTTACCT CTGTAACATA GAGAAACCGT GGCATACTTG GATCTTTCGT ACTTTGTTAG AATTCTTCGA AGTAGATCAA GAAAGGGTTG CCAAGCATAT GAGCAATATC ACATAGAAGA GTGTGGCTTA CAGGTCAAGT TTTTACTCTC TGCTACGAAG TCAATCTAGC AGAGTTTGAA CAGATTGAGA ATTTGGATGA AGAGATGTTG ACCTTCATTT GCAATGCTTC ATTTCTGTGA TGTAATTTGT TTTGTCCCAG TGACGGGGCT CATTTTCTGG TGCC |
mRNA UTR + CDS |
| >Mp1g00960.1 TTTGCTAGGA CATTTGCTAC TGTTGTGAAA AATGCAGAAG ATTCTGTCGA ATAAGTTCCT TCCTTCCGAA TGTTGCAACT TTGCGTCCGT CTTCTTCTCA TGATACGAGG CTTAGGCTTG TGAAAGAGAC ACTCAAACAT TGCACAATGT TAGTCTTTGA AGAAGAAGAG CAATACAATG CTGCTCTACT CGCGTGCTGA AATTTTGCGA ATTAATTGCG ATATTCACAG CAGCAGCATG AGTCCATTGA TTTGAGTTAT CAGAGAGGCA TTAGTGGTCG GATCCAGCGC ACGGTCGCAG CAGTTGCCTC GAGTGATCTG CAATCATCGC GAATTGTTGT CGATAGTGAA TTCCATTTTC CACGCGTCTG TCTGGATTTC CCGCACAATC CACCCGATCG TGATATTGAG AAGGCCGAGG AAAATCACTT TGTTCGGATA GAATAAGACA GTGCAATCTT ATGGCATCAA GGGCAAGACT GTTCAAAGAG TACAAAGAAG TACAAAGAGA CAGAGGGCAG GATTCGGATA TTCAGCTTCT TTGTGACGAA ACAAACATTT ATCGTTGGAC TGCACTGATT AAGGGACCAA CAGATACTCC TTACCAAGAA GGTGTTTTTC AGCTTGCCAT TAATGTGCCG GAACAATATC CTCTAGTACC ACCACAAGTT CGTTTCGTGA CAAAGATATT TCACCCAAAT GTTCACTTCA AGACCGGCGA GATTTGTTTG GACATATTGA AGACAGCTTG GAGTCCGGCA TGGACACTGC AGTCAGTTTG CCGTGCTGTT ATTGCACTGT TGGCACATCC AGAGGCCGAC AGTCCTCTCA ATTGCGACTG CGGAAACTTG TTACGATCGG GGGACAATCG GGGTTATCAG TCTATGGCTT TGATGTACAC AAGGCTAGCA GCTGTGGCAT CCGTGCCAAA CAGTTCTGCC TAAGACAACC ATCCACTGCA ATCGGCCGTC CCTGTACATC ACAGATTGTC GACCTCTTAC CTCTGTAACA TAGAGAAACC GTGGCATACT TGGATCTTTC GTACTTTGTT AGAATTCTTC GAAGTAGATC AAGAAAGGGT TGCCAAGCAT ATGAGCAATA TCACATAGAA GAGTGTGGCT TACAGGTCAA GTTTTTACTC TCTGCTACGA AGTCAATCTA GCAGAGTTTG AACAGATTGA GAATTTGGAT GAAGAGATGT TGACCTTCAT TTGCAATGCT TCATTTCTGT GATGTAATTT GTTTTGTCCC AGTGACGGGG CTCATTTTCT GGTGCC |
CDS |
| >Mp1g00960.1 ATGGCATCAA GGGCAAGACT GTTCAAAGAG TACAAAGAAG TACAAAGAGA CAGAGGGCAG GATTCGGATA TTCAGCTTCT TTGTGACGAA ACAAACATTT ATCGTTGGAC TGCACTGATT AAGGGACCAA CAGATACTCC TTACCAAGAA GGTGTTTTTC AGCTTGCCAT TAATGTGCCG GAACAATATC CTCTAGTACC ACCACAAGTT CGTTTCGTGA CAAAGATATT TCACCCAAAT GTTCACTTCA AGACCGGCGA GATTTGTTTG GACATATTGA AGACAGCTTG GAGTCCGGCA TGGACACTGC AGTCAGTTTG CCGTGCTGTT ATTGCACTGT TGGCACATCC AGAGGCCGAC AGTCCTCTCA ATTGCGACTG CGGAAACTTG TTACGATCGG GGGACAATCG GGGTTATCAG TCTATGGCTT TGATGTACAC AAGGCTAGCA GCTGTGGCAT CCGTGCCAAA CAGTTCTGCC TAA |
Protein |
| >Mp1g00960.1 MASRARLFKE YKEVQRDRGQ DSDIQLLCDE TNIYRWTALI KGPTDTPYQE GVFQLAINVP EQYPLVPPQV RFVTKIFHPN VHFKTGEICL DILKTAWSPA WTLQSVCRAV IALLAHPEAD SPLNCDCGNL LRSGDNRGYQ SMALMYTRLA AVASVPNSSA |