Mp1g07140



Description

Annotation

Database ID Description
CDD cd10507 Zn-ribbon_RPA12
FunFam G3DSA:2.20.25.10:FF:000049 DNA-directed RNA polymerase subunit
Gene3D G3DSA:2.20.25.10 -
KEGG K03000 DNA-directed RNA polymerase I subunit RPA12
KOG KOG2907 RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12; [K]
PANTHER PTHR11239 DNA-DIRECTED RNA POLYMERASE
PIRSF PIRSF005586 RNApol_RpoM
Pfam PF01096 Transcription factor S-II (TFIIS)
ProSitePatterns PS00466 Zinc finger TFIIS-type signature.
ProSiteProfiles PS51133 Zinc finger TFIIS-type profile.
SMART SM00440 Cys4_2
SUPERFAMILY SSF57783 Zinc beta-ribbon
GO GO:0001054 RNA polymerase I activity
GO GO:0003676 nucleic acid binding
GO GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO GO:0005736 RNA polymerase I complex
GO GO:0006351 DNA-templated transcription
GO GO:0006363 termination of RNA polymerase I transcription
GO GO:0008270 zinc ion binding
MapolyID Mapoly0043s0107 -

Nomenclature

Gene symbol Product Transcript ID Status
MpSGF1 DNA-directed RNA polymerase I subunit RPA12 Published
MpRPA12 DNA-directed RNA polymerase I subunit RPA12 Provisional

Associated Literature (AI-based literature mining)

Locus ID for MpSGF1, listed in the candidate peptide gene table.

0 core 1 peripheral

Kobayashi, H., et al. (2023) · Frontiers in Plant Science  research sequence background
Locus ID for MpSGF1, listed in the candidate peptide gene table.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g07140.1 chr1:7641037..7646323 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX


Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.