Mp1g11670



Description

Annotation

Database ID Description
CDD cd05904 4CL
FunFam G3DSA:3.30.300.30:FF:000007 4-coumarate--CoA ligase 2
FunFam G3DSA:3.40.50.12780:FF:000003 Long-chain-fatty-acid--CoA ligase FadD
Gene3D G3DSA:3.30.300.30 -
Gene3D G3DSA:3.40.50.12780 -
KEGG K01904 4-coumarate--CoA ligase [EC:6.2.1.12]
KOG KOG1176 Acyl-CoA synthetase; [I]
PANTHER PTHR24096 LONG-CHAIN-FATTY-ACID--COA LIGASE
Pfam PF00501 AMP-binding enzyme
Pfam PF13193 AMP-binding enzyme C-terminal domain
ProSitePatterns PS00455 Putative AMP-binding domain signature.
SUPERFAMILY SSF56801 Acetyl-CoA synthetase-like
GO GO:0016405 CoA-ligase activity
GO GO:0004467 long-chain fatty acid-CoA ligase activity
GO GO:0046949 fatty-acyl-CoA biosynthetic process
MapolyID Mapoly0014s0059 -

Nomenclature

Gene symbol Product Transcript ID Status
MpACOS5 Acyl-CoA synthase, Secondary metabolism enzyme Provisional
This is a provisional entry. If you want to update the entry, please contact the administrator.

Associated Literature (AI-based literature mining)

Acyl-CoA synthase, Secondary metabolism enzyme (from nomenclature)

0 core 1 peripheral

Dierschke, T., et al. (2024) · Current Biology  research experimental background
Acyl-CoA synthetase 5; sporopollenin/cell-wall pathway DEG.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g11670.1 chr1:12193860..12197136 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g11670 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g11670 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.