Mp1g20730



Description

Annotation

Database ID Description
CDD cd02187 beta_tubulin
Coils Coil Coil
FunFam G3DSA:1.10.287.600:FF:000002 Tubulin beta chain
FunFam G3DSA:3.30.1330.20:FF:000002 Tubulin beta chain
FunFam G3DSA:3.40.50.1440:FF:000005 Tubulin beta chain
Gene3D G3DSA:1.10.287.600 Helix hairpin bin
Gene3D G3DSA:3.30.1330.20 -
Gene3D G3DSA:3.40.50.1440 Tubulin/FtsZ, GTPase domain
KEGG K07375 tubulin beta
KOG KOG1375 Beta tubulin; [Z]
KOG KOG2530 Members of tubulin/FtsZ family; C-term missing; [Z]
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR11588 TUBULIN
PRINTS PR01161 Tubulin signature
PRINTS PR01163 Beta-tubulin signature
Pfam PF00091 Tubulin/FtsZ family, GTPase domain
Pfam PF03953 Tubulin C-terminal domain
ProSitePatterns PS00227 Tubulin subunits alpha, beta, and gamma signature.
ProSitePatterns PS00228 Tubulin-beta mRNA autoregulation signal.
SMART SM00864 Tubulin_4
SMART SM00865 Tubulin_C_4
SUPERFAMILY SSF52490 Tubulin nucleotide-binding domain-like
SUPERFAMILY SSF55307 Tubulin C-terminal domain-like
GO GO:0003924 GTPase activity
GO GO:0005200 structural constituent of cytoskeleton
GO GO:0007017 microtubule-based process
GO GO:0005525 GTP binding
GO GO:0000278 mitotic cell cycle
GO GO:0005874 microtubule
GO GO:0005737 cytoplasm
GO GO:0000226 microtubule cytoskeleton organization
MapolyID Mapoly0001s0408 -

Nomenclature

Gene symbol Product Transcript ID Status
MpTUB3 beta-tubulin Published

Associated Literature (AI-based literature mining)

beta-tubulin; To analyze microtubule function and cell division in Marchantia, the expression of four MpTUBs was compared and TUB1 was found to be most uniformly expressed in Marchantia polymorpha tissues. The live-cell microtubule marker MpTUB1-GFP was generated, which is expressed under the control of the MpEF1a promoter. The observed intimate cooperation of Marchantia polar organizers comprising TUB1 with preprophase bands provides insight into the evolution of division plane alignment control of land plants. (from nomenclature)

2 core 0 peripheral

Aggarwal, B., et al. (2024) · RNA Biology  research experimental subject
Target of MpmiR11887, encoding a beta-tubulin protein. Shows lowest expression in antheridiophores by RT-qPCR, inversely correlated with miRNA levels.
Buschmann, H., et al. (2016) · New Phytologist  research experimental subject
beta-tubulin gene MpTUB3.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g20730.1 chr1:21752317..21755150 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g20730 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g20730 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.