Mp3g07440



Description

Annotation

Database ID Description
Gene3D G3DSA:3.30.420.10 -
Gene3D G3DSA:3.40.50.2300 -
KOG KOG1041 Translation initiation factor 2C (eIF-2C) and related proteins; N-term missing; [J]
KOG KOG4090 Uncharacterized conserved protein; C-term missing; [S]
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR22891 EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
Pfam PF02171 Piwi domain
ProSiteProfiles PS50822 Piwi domain profile.
SMART SM00950 Piwi_a_2
SUPERFAMILY SSF53098 Ribonuclease H-like
GO GO:0004521 RNA endonuclease activity
GO GO:0003723 RNA binding
GO GO:0035194 regulatory ncRNA-mediated post-transcriptional gene silencing
GO GO:0005737 cytoplasm
GO GO:0003676 nucleic acid binding
MapolyID Mapoly0006s0218 -

Nomenclature

Gene symbol Product Transcript ID Status
MpPIWIb PIWI, siRNA biogenesis Provisional

Associated Literature (AI-based literature mining)

PIWI-domain containing protein implicated in siRNA processing. Its expression was profiled and found increased in the antheridiophore.

1 core 1 peripheral

Schmid, M. W., et al. (2018) · Genome Biology  research experimental subject
PIWI-domain containing protein implicated in siRNA processing. Its expression was profiled and found increased in the antheridiophore.
Aguilar-Cruz, A., et al. (2019) · New Phytologist  research experimental background
MpPIWIb PIWI-clade Argonaute; methylation review

Transcript models

Transcript ID Location Sequences Extract region
Mp3g07440.2 chr3:7656145..7662735 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp3g07440.3 chr3:7656145..7662735 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp3g07440.1 chr3:7656332..7662735 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g07440 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g07440 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.