Mp5g15980



Description

Annotation

Database ID Description
CDD cd06100 CCL_ACL-C
FunFam G3DSA:1.10.230.10:FF:000005 ATP-citrate synthase subunit 1
FunFam G3DSA:3.40.50.261:FF:000003 ATP-citrate synthase subunit
FunFam G3DSA:3.40.50.720:FF:000136 ATP-citrate synthase beta chain protein
Gene3D G3DSA:1.10.230.10 -
Gene3D G3DSA:3.40.50.261 -
Gene3D G3DSA:3.40.50.720 -
KEGG K01648 ATP citrate (pro-S)-lyase [EC:2.3.3.8]
KOG KOG1254 ATP-citrate lyase; [C]
PANTHER PTHR23118 ATP-CITRATE SYNTHASE
Pfam PF00285 Citrate synthase, C-terminal domain
Pfam PF00549 CoA-ligase
ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site.
ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1.
ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3.
SUPERFAMILY SSF48256 Citrate synthase
SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains
GO GO:0003878 ATP citrate synthase activity
GO GO:0003824 catalytic activity
GO GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer
GO GO:0006099 tricarboxylic acid cycle
GO GO:0006085 acetyl-CoA biosynthetic process
GO GO:0006633 fatty acid biosynthetic process
GO GO:0005829 cytosol
MapolyID Mapoly0071s0012 -

Nomenclature

Gene symbol Product Transcript ID Status
MpCIS2 organic acid biosynthesis and exudation Provisional

Associated Literature (AI-based literature mining)

organic acid biosynthesis and exudation (from nomenclature)

0 core 1 peripheral

Rico-Reséndiz, F., et al. (2020) · International Journal of Molecular Sciences  research experimental background
Citrate synthase family member with variable/transient expression in the transcriptome.

Transcript models

Transcript ID Location Sequences Extract region
Mp5g15980.1 chr5:20049237..20051605 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g15980 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g15980 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.