Mp6g00050



Description

Annotation

Database ID Description
CDD cd00179 SynN
CDD cd15848 SNARE_syntaxin1-like
Coils Coil Coil
FunFam G3DSA:1.20.5.110:FF:000008 Syntaxin 132
FunFam G3DSA:1.20.58.70:FF:000003 Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group
Gene3D G3DSA:1.20.5.110 -
Gene3D G3DSA:1.20.58.70 -
KEGG K08486 syntaxin 1B/2/3
KOG KOG0810 SNARE protein Syntaxin 1 and related proteins; [U]
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR19957 SYNTAXIN
Pfam PF00804 Syntaxin
Pfam PF05739 SNARE domain
ProSitePatterns PS00914 Syntaxin / epimorphin family signature.
ProSiteProfiles PS50192 t-SNARE coiled-coil homology domain profile.
SMART SM00397 tSNARE_6
SMART SM00503 SynN_4
SUPERFAMILY SSF47661 t-snare proteins
GO GO:0000149 SNARE binding
GO GO:0016192 vesicle-mediated transport
GO GO:0006906 vesicle fusion
GO GO:0012505 endomembrane system
GO GO:0031201 SNARE complex
GO GO:0006886 intracellular protein transport
GO GO:0005886 plasma membrane
GO GO:0048278 vesicle docking
GO GO:0016021 membrane
GO GO:0006887 exocytosis
GO GO:0016020 membrane
GO GO:0005484 SNAP receptor activity
MapolyID Mapoly0163s0015 -

Nomenclature

Gene symbol Product Transcript ID Status
MpSYP12A Common ortholog of both Arabidopsis SYP11 and SYP12 genes Published

Associated Literature (AI-based literature mining)

Common ortholog of both Arabidopsis SYP11 and SYP12 genes; The transcript is detected in thalli, antheridiophores, archegoniophores, and sporelings. Monomeric-Citrine-tagged MpSYP12A under the regulation of its own regulatory elements is localized to the plasma membrane. (from nomenclature)

3 core 5 peripheral

Melkonian, K., et al. (2022a) · New Phytologist  research experimental subject
Plasma-membrane Qa-SNARE; one of two PM SNAREs whose interactome was mapped by miniTurbo proximity labeling, identifying SNARE-proximal proteins.
Minamino, N., et al. (2022) · Development  research experimental subject
Plasma-membrane-resident Qa-SNARE (SYP12A); followed during organelle/membrane remodeling in spermiogenesis.
Kanazawa, T., et al. (2020) · Nature Communications  research experimental subject
Syntaxin-1/SYP1 homolog (KNOLLE-like); localizes to forming cell plates; KO not recoverable (likely essential), mutant cells enlarged with wall stubs — role in cytokinesis.
Norizuki, T., et al. (2023) · Frontiers in Plant Biology  research experimental comparator
Plasma membrane SNARE whose vacuolar targeting and degradation occurred normally in Mpatg5 mutants, showing autophagy defects are selective.
Romani, F., et al. (2022) · Journal of Experimental Botany  research citation background
Review (liverwort oil bodies): cites MpSYP12A required for cell-plate formation during cytokinesis.

Transcript models

Transcript ID Location Sequences Extract region
Mp6g00050.1 chr6:164347..166891 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp6g00050 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp6g00050 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.