Mp6g10540



Description

Annotation

Database ID Description
CDD cd00377 ICL_PEPM
Gene3D G3DSA:3.20.20.60 -
KOG KOG1260 Isocitrate lyase; C-term missing; [C]
PANTHER PTHR42905 PHOSPHOENOLPYRUVATE CARBOXYLASE
Pfam PF13714 Phosphoenolpyruvate phosphomutase
SUPERFAMILY SSF51621 Phosphoenolpyruvate/pyruvate domain
GO GO:0003824 catalytic activity
MapolyID Mapoly0016s0095 -

Nomenclature

Gene symbol Product Transcript ID Status
MpMLS1b organic acid biosynthesis and exudation Provisional

Associated Literature (AI-based literature mining)

Malate synthase family member with variable/transient expression in the transcriptome.

0 core 1 peripheral

Rico-Reséndiz, F., et al. (2020) · International Journal of Molecular Sciences  research experimental background
Malate synthase family member with variable/transient expression in the transcriptome.

Transcript models

Transcript ID Location Sequences Extract region
Mp6g10540.1 chr6:13544935..13552127 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp6g10540.2 chr6:13544935..13552127 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp6g10540 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp6g10540 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.