Mp6g20400



Description

Annotation

Database ID Description
CDD cd02846 PAZ_argonaute_like
CDD cd04657 Piwi_ago-like
Gene3D G3DSA:2.170.260.10 paz domain
Gene3D G3DSA:3.30.420.10 -
Gene3D G3DSA:3.40.50.2300 -
KEGG K11593 eukaryotic translation initiation factor 2C
KOG KOG1041 Translation initiation factor 2C (eIF-2C) and related proteins; [J]
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR22891 EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
Pfam PF02170 PAZ domain
Pfam PF02171 Piwi domain
Pfam PF08699 Argonaute linker 1 domain
Pfam PF16486 N-terminal domain of argonaute
Pfam PF16488 Argonaute linker 2 domain
ProSiteProfiles PS50821 PAZ domain profile.
ProSiteProfiles PS50822 Piwi domain profile.
SMART SM00950 Piwi_a_2
SMART SM01163 DUF1785_2
SUPERFAMILY SSF101690 PAZ domain
SUPERFAMILY SSF53098 Ribonuclease H-like
GO GO:0004521 RNA endonuclease activity
GO GO:0003723 RNA binding
GO GO:0005515 protein binding
GO GO:0035194 regulatory ncRNA-mediated post-transcriptional gene silencing
GO GO:0005737 cytoplasm
GO GO:0003676 nucleic acid binding
MapolyID Mapoly0045s0024 -

Nomenclature

Gene symbol Product Transcript ID Status
MpAGO4b miRNA biogenesis protein Provisional

Associated Literature (AI-based literature mining)

ARGONAUTE4b; sRNA effector.

1 core 1 peripheral

Tsuzuki, M., et al. (2016) · Plant and Cell Physiology  research experimental subject
ARGONAUTE4b; sRNA effector.
Hong, S.-F., et al. (2024) · Plant & Cell Physiology  research sequence comparator
ARGONAUTE4-like; AGO family member.

Transcript models

Transcript ID Location Sequences Extract region
Mp6g20400.1 chr6:26506953..26509655 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX


Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.