Mp6g21040



Description

Annotation

Database ID Description
Gene3D G3DSA:2.30.30.490 -
Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39
Gene3D G3DSA:3.90.120.10 DNA Methylase, subunit A, domain 2
KEGG K00558 DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
KOG KOG1886 BAH domain proteins; C-term missing; [K]
KOG KOG1911 Heterochromatin-associated protein HP1 and related CHROMO domain proteins; C-term missing; [B]
MobiDBLite mobidb-lite consensus disorder prediction
NCBIfam TIGR00675 DNA (cytosine-5-)-methyltransferase
PANTHER PTHR10629 CYTOSINE-SPECIFIC METHYLTRANSFERASE
PRINTS PR00105 Cytosine-specific DNA methyltransferase signature
Pfam PF00145 C-5 cytosine-specific DNA methylase
Pfam PF00385 Chromo (CHRromatin Organisation MOdifier) domain
Pfam PF01426 BAH domain
ProSitePatterns PS00598 Chromo domain signature.
ProSiteProfiles PS50013 Chromo and chromo shadow domain profile.
ProSiteProfiles PS51038 BAH domain profile.
ProSiteProfiles PS51679 C-5 cytosine-specific DNA methylase (Dnmt) domain profile.
SMART SM00298 chromo_7
SMART SM00439 BAH_4
SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases
SUPERFAMILY SSF54160 Chromo domain-like
GO GO:0008168 methyltransferase activity
GO GO:0003886 DNA (cytosine-5-)-methyltransferase activity
GO GO:0005634 nucleus
GO GO:0010424 obsolete DNA methylation on cytosine within a CG sequence
GO GO:0010216 obsolete negative regulation of gene expression via chromosomal DNA cytosine methylation
GO GO:0003677 DNA binding
GO GO:0003682 chromatin binding
MapolyID Mapoly0091s0051 -

Nomenclature

Gene symbol Product Transcript ID Status
MpCMTb CHROMOMETHYLASE, DNA (cytosine-5-)-methyltransferase Published
MpCMT2 Chromatin related protein Provisional

Associated Literature (AI-based literature mining)

CHROMOMETHYLASE family protein linked to de novo methylation in CHG/CHH contexts. Its expression was profiled and found to be preferentially expressed in young sporophytes during sporophyte development.

1 core 0 peripheral

Schmid, M. W., et al. (2018) · Genome Biology  research experimental subject
CHROMOMETHYLASE family protein linked to de novo methylation in CHG/CHH contexts. Its expression was profiled and found to be preferentially expressed in young sporophytes during sporophyte development.

Transcript models

Transcript ID Location Sequences Extract region
Mp6g21040.1 chr6:27350114..27359255 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp6g21040.2 chr6:27350114..27359255 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX


Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.