MpVg00320



Description

Annotation

Database ID Description
CDD cd09272 RNase_HI_RT_Ty1
Gene3D G3DSA:3.30.420.10 -
Gene3D G3DSA:4.10.60.10 -
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR42648 TRANSPOSASE, PUTATIVE-RELATED
Pfam PF00665 Integrase core domain
Pfam PF07727 Reverse transcriptase (RNA-dependent DNA polymerase)
Pfam PF13976 GAG-pre-integrase domain
Pfam PF14223 gag-polypeptide of LTR copia-type
ProSiteProfiles PS50158 Zinc finger CCHC-type profile.
ProSiteProfiles PS50994 Integrase catalytic domain profile.
SMART SM00343 c2hcfinal6
SUPERFAMILY SSF53098 Ribonuclease H-like
SUPERFAMILY SSF56672 DNA/RNA polymerases
SUPERFAMILY SSF57756 Retrovirus zinc finger-like domains
GO GO:0015074 DNA integration
GO GO:0003676 nucleic acid binding
GO GO:0008270 zinc ion binding

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining)

V-chromosome gene of unknown function, not expressed in the SUFpA[V] line; identified as a candidate target of FGMYB suppression.

0 core 1 peripheral

Kajiwara, T., et al. (2024) · Plant & Cell Physiology  research sequence background
V-chromosome gene of unknown function, not expressed in the SUFpA[V] line; identified as a candidate target of FGMYB suppression.

Transcript models

Transcript ID Location Sequences Extract region
MpVg00320.1 chrV:1944659..1949460 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of MpVg00320 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of MpVg00320 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.