Mp1g02840



Description

Annotation

Database ID Description
KEGG K11592 endoribonuclease Dicer [EC:3.1.26.-]
KOG KOG0701 dsRNA-specific nuclease Dicer and related ribonucleases; [A]
SMART SM00490 helicmild6
SMART SM00487 ultradead3
ProSitePatterns PS00517 Ribonuclease III family signature.
ProSiteProfiles PS50821 PAZ domain profile.
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
Gene3D G3DSA:3.40.50.300 -
ProSiteProfiles PS50137 Double stranded RNA-binding domain (dsRBD) profile.
Pfam PF04851 Type III restriction enzyme, res subunit
PANTHER PTHR14950:SF46 ENDORIBONUCLEASE DICER HOMOLOG 3
SUPERFAMILY SSF69065 RNase III domain-like
Pfam PF00636 Ribonuclease III domain
Gene3D G3DSA:3.30.160.380 -
Gene3D G3DSA:1.20.1320.30 -
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:2.170.260.10 paz domain
CDD cd18034 DEXHc_dicer
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Pfam PF02170 PAZ domain
Pfam PF03368 Dicer dimerisation domain
PANTHER PTHR14950 DICER-RELATED
ProSiteProfiles PS51327 Dicer double-stranded RNA-binding fold domain profile.
ProSiteProfiles PS50142 Ribonuclease III family domain profile.
SUPERFAMILY SSF101690 PAZ domain
SUPERFAMILY SSF54768 dsRNA-binding domain-like
CDD cd00593 RIBOc
SMART SM00949 PAZ_2_a_3
Coils Coil Coil
Gene3D G3DSA:1.10.1520.10 -
SMART SM00535 riboneu5
SMART SM00358 DRBM_3
Gene3D G3DSA:3.30.160.20 -
Pfam PF00271 Helicase conserved C-terminal domain
MapolyID Mapoly0113s0032 -

Nomenclature

Gene symbol Product Transcript ID Status
MpDCL1a miRNA biogenesis protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g02840.1 chr1:3138614..3148472 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.