Mp1g04370



Description

Annotation

Database ID Description
Pfam PF01554 MatE
NCBIfam TIGR00797 MATE family efflux transporter
PANTHER PTHR42893 PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED
Coils Coil Coil
CDD cd13136 MATE_DinF_like
KOG KOG1347 Uncharacterized membrane protein, predicted efflux pump; [R]
MapolyID Mapoly0005s0170 -
GO GO:0055085 transmembrane transport
GO GO:0015297 antiporter activity
GO GO:0016020 membrane
GO GO:0042910 xenobiotic transmembrane transporter activity

Nomenclature

Gene symbol Product Transcript ID Status
MpEDS5 Salicylic acid related protein, Hormone related protein, organic acid biosynthesis and exudation Provisional

Associated Literature (AI-based literature mining, Beta-version)

MATE citrate efflux transporter up-regulated at all time points under low Pi, consistent with citrate exudation response.

1 core 0 peripheral

Rico-Reséndiz, F., et al. (2020) · International Journal of Molecular Sciences  research experimental subject
MATE citrate efflux transporter up-regulated at all time points under low Pi, consistent with citrate exudation response.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g04370.1 chr1:4762792..4768304 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g04370 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g04370 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.