Mp1g05620



Description

Annotation

Database ID Description
SUPERFAMILY SSF48150 DNA-glycosylase
PANTHER PTHR46213 TRANSCRIPTIONAL ACTIVATOR DEMETER
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF15628 RRM in Demeter
SMART SM00525 ccc3
Gene3D G3DSA:1.10.1670.10 -
KOG KOG1921 Endonuclease III; N-term missing; [L]
MapolyID Mapoly0005s0045 -
GO GO:0003824 catalytic activity
GO GO:0051539 4 iron, 4 sulfur cluster binding
GO GO:0080111 obsolete DNA demethylation
GO GO:0019104 DNA N-glycosylase activity
GO GO:0006281 DNA repair
GO GO:0035514 DNA demethylase activity

Nomenclature

Gene symbol Product Transcript ID Status
MpROS1a DNA demethylase, DNA glycosylase/lyase Published

Associated Literature (AI-based literature mining, Beta-version)

Putative DNA demethylase whose A. thaliana homolog ROS1 removes methylation with a non-CG preference. Expression reached its highest in antheridiophores and sporophytes, though the authors note its demethylase function in Marchantia remains to be demonstrated.

1 core 0 peripheral

Schmid, M. W., et al. (2018) · Genome Biology  research experimental subject
Putative DNA demethylase whose A. thaliana homolog ROS1 removes methylation with a non-CG preference. Expression reached its highest in antheridiophores and sporophytes, though the authors note its demethylase function in Marchantia remains to be demonstrated.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g05620.1 chr1:6054401..6062299 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g05620.2 chr1:6048757..6062306 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g05620 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g05620 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.