Mp1g10780



Description

Annotation

Database ID Description
FunFam G3DSA:3.40.50.11350:FF:000011 O-fucosyltransferase 28
PANTHER PTHR31741 OS02G0726500 PROTEIN-RELATED
CDD cd11299 O-FucT_plant
Pfam PF10250 GDP-fucose protein O-fucosyltransferase
MobiDBLite mobidb-lite consensus disorder prediction
KEGG K23280 rhamnogalacturonan I rhamnosyltransferase [EC:2.4.1.351]
MapolyID Mapoly0014s0149 -
GO GO:0005737 cytoplasm

Nomenclature

Gene symbol Product Transcript ID Status
MpRRT3 RG-I rhamnosyltransferases Provisional

Associated Literature (AI-based literature mining, Beta-version)

Genome locus of MpRRT3; recombinant protein expressed as a FLAG-tagged fusion in tobacco exhibited the same RG-I rhamnosyltransferase activity as MpRRT1, and it falls in the RRT clade of GT106.

1 core 1 peripheral

Wachananawat, B., et al. (2020) · Frontiers in Plant Science  research experimental subject
Genome locus of MpRRT3; recombinant protein expressed as a FLAG-tagged fusion in tobacco exhibited the same RG-I rhamnosyltransferase activity as MpRRT1, and it falls in the RRT clade of GT106.
Pfeifer, L., et al. (2022) · Journal of Experimental Botany  research citation background
Review: RG-I rhamnosyltransferase MpRRT3, characterized biochemically.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g10780.1 chr1:11292155..11297603 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g10780 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g10780 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.