Mp1g11660



Description

Annotation

Database ID Description
CDD cd00086 homeodomain
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS50071 'Homeobox' domain profile.
SUPERFAMILY SSF46689 Homeodomain-like
Gene3D G3DSA:1.10.10.60 -
SMART SM00389 HOX_1
Pfam PF00046 Homeodomain
PANTHER PTHR46777 WUSCHEL-RELATED HOMEOBOX 13
KOG KOG0492 Transcription factor MSH, contains HOX domain; [R]
KOG KOG0483 Transcription factor HEX, contains HOX and HALZ domains; N-term missing; [K]
MapolyID Mapoly0014s0060 -
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0003677 DNA binding

Nomenclature

Gene symbol Product Transcript ID Status
MpHD6 transcription factor, HD, homeodomain protein Published
MpWOX transcription factor, HD, homeodomain protein Published

Associated Literature (AI-based literature mining, Beta-version)

Gene ID for MpWOX, the sole WUS-related gene in M. polymorpha; loss-of-function alleles tested to show MpCLE2 signaling is WOX-independent.

1 core 2 peripheral

Hirakawa, Y., et al. (2020) · Current Biology  research experimental subject
Gene ID for MpWOX, the sole WUS-related gene in M. polymorpha; loss-of-function alleles tested to show MpCLE2 signaling is WOX-independent.
Melissa DÁ, Luis LJ, Eduardo FS, Annie EC, Domingo MÁ, Tom FJ, Jesús LR, Fernando OM, John BL, Mario AA, Cruz-Ramírez A. (2025) · Physiologia plantarum  research citation background
Cited from Fu et al. as a downstream gene by which MpANT promotes meristem maintenance.
Fu, J., et al. (2024) · Plant and Cell Pysiology  research experimental comparator
WUSCHEL-related homeobox; meristem/stem-cell marker examined alongside MpPLT.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g11660.1 chr1:12183561..12190800 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g11660.2 chr1:12183644..12190800 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g11660 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g11660 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.