Mp1g13670



Description

Annotation

Database ID Description
Coils Coil Coil
Pfam PF03908 Sec20
PANTHER PTHR12825 BNIP1-RELATED
KEGG K08497 protein transport protein SEC20
KOG KOG1666 V-SNARE; N-term missing; [U]
MapolyID Mapoly0019s0137 -
GO GO:0005783 endoplasmic reticulum
GO GO:0031201 SNARE complex
GO GO:0005484 SNAP receptor activity
GO GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum

Nomenclature

Gene symbol Product Transcript ID Status
MpSEC20 Ortholog of Arabidopsis SEC20 gene Published

Associated Literature (AI-based literature mining, Beta-version)

Ortholog of Arabidopsis SEC20 gene; The transcript is detected in thalli, antheridiophores, archegoniophores, and sporelings. Citrine-tagged MpSEC20 driven by the cauliflower mosaic virus 35S promoter is localized to the endoplasmic reticulum. (from nomenclature)

0 core 1 peripheral

Kanazawa, T., et al. (2020) · Nature Communications  research experimental tool
ER SNARE marker; compartment control.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g13670.1 chr1:13929884..13935632 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g13670.2 chr1:13930580..13935214 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g13670.3 chr1:13930580..13935214 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g13670 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g13670 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.