Mp1g15680



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
CDD cd16531 RING-HC_RING1-like
Pfam PF13923 Zinc finger, C3HC4 type (RING finger)
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
SMART SM00184 ring_2
PANTHER PTHR46537 OS11G0578200 PROTEIN
Gene3D G3DSA:3.10.20.90 -
ProSitePatterns PS00518 Zinc finger RING-type signature.
ProSiteProfiles PS50089 Zinc finger RING-type profile.
SUPERFAMILY SSF57850 RING/U-box
KEGG K10695 E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
KOG KOG0311 Predicted E3 ubiquitin ligase; C-term missing; [O]
MapolyID Mapoly0033s0093 -

Nomenclature

Gene symbol Product Transcript ID Status
MpRING1A Chromatin related protein Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp1g15680.1 chr1:16357865..16364490 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g15680 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g15680 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.