Mp1g16510
Description
Annotation
| Database | ID | Description |
|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| PANTHER | PTHR33469 | PROTEIN ELF4-LIKE 4 |
| Pfam | PF07011 | Early Flowering 4 domain |
| GO | GO:0009649 | entrainment of circadian clock |
| GO | GO:0042753 | positive regulation of circadian rhythm |
| MapolyID | Mapoly0033s0009 | - |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpELF4 | A subunit of evening complex | Published |
Associated Literature (AI-based literature mining)
Evening-complex component studied via knockdown lines and expression assays. Knockdown increases growth rate, significantly higher than wild type, and the protein assembles into the EC with MpLUX and MpELF3.
2 core 2 peripheral
Lagercrantz, U., et al. (2022)
· PLoS ONE research experimental subject
Evening-complex component studied via knockdown lines and expression assays. Knockdown increases growth rate, significantly higher than wild type, and the protein assembles into the EC with MpLUX and MpELF3.
Linde, A.-M., et al. (2017)
· New Phytologist research experimental subject
Single ELF4-like homologue that did not show rhythmic expression under any tested condition; not analyzed further by mutant or reporter assays.
Lagerkrantz, U., et al. (2020)
· Scientific Reports research sequence background
Reported as a homolog present in the M. polymorpha genome; not experimentally characterized here.
Lagercrantz, U., et al. (2021)
· New Phytologist research experimental background
MpEFL (MpELF4-LIKE) evening-complex gene
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp1g16510 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp1g16510.2 CTGCAGGGAG AACATGCTCA AAGCCCGGAG CGGAAGGCTT CATCAGTGCC GTGTGTCAGC GCCGGGTGGG AGGTCGACAT CGAGGAGGAG AGTCGTCGAT GATACGAGGA GTAGGTATCC GTCCGGAAGC GGTGCAGAAT GACTCTCCCG AGCGCGCGAT GGACGATTGA AGGGGCTTTG CCGTGGAGGA GTGGCAGCGC AATCTCAAGA AAAATCTCGG GTCTTCTACT ATATTCTCCT GTCTTCCTTT TTGAGTTTGG GCCTTGAAGG TGAGACTCAA GTGCCCCGTT TCCCGCCTTC TTGTGGTTTC CTGACGGAGC AGGATATCTG CTGTTCTGCT CACCTCGTGC TCGATTCTAG GTCTGTTTCA ACGAAACTGG ATAGAGTGAT TGAATCTTTG TGCATTCATT CGTACTTGCT CCCTCGTGTT GGATTCCCCA CCGTCGAGGA ATTTTCTTAG AGCAGGAGAC AGAATGTTCC GTCCCCCACC ATCCTGTAGT GAAAGTCTGC GATGTTTTTT TTCTAGCTTG GGGACTTCTT TCGACATTGG GATGGCTATA CTCTGAGTAG TACTTGGAAA GGCACGGTCG TGTTTGTTGC AAGTGGATTA GAAAGTGCGC AACGAGAGTA GTCAGCTCAA TGTTATCAGC ACGTACGCCT GACTTTGCTG GTCGTTCAGA AGGTGGCAGC CGTTTTGTGA GAAGTGCTCG TCCAGTGTTT GGCTGAATTT CGTGTTGTTT TTTTTGGGGG CCGTGTCTAG AGGAGCGGAT TGTCTTCCAG TAGAGATTTG CGAGTCTGGA AGCGATGGAC ACCGATGCCT CTTCCGCTGC TCCGGCGAAG CCTGGACCAC AGATGGATAC CAAAATTTGG GCAGGATTCC ACCAAAATTT TAGTCAAGTA CAGTACCTGT TGGATCACAA TCGACTGCTT ATCAATGAAA TCAATCAGAA TCATGAGTCC AAAATTCCCG AAAGTCTCAC TCGTAATGTT CTGCTGATTA GAGAGCTCAA CAACAATATC ACTAAAGTTG TTGACTTGTA TGCCAGCCTC TCCGTGTCAT TTGTAAAACT TTTTGATAAC AATTCGTCAG AAGAAGACAC TACAAGGGCC TCATCGAAAG CAGGCGAAAC GATTGGAGTC ATGAAACCCC CTCCTGCATC CCAAGGCATG AAGAATGTAC GGTCATCTAT GGACTAAGTG TTCTGCCCAA TTTGTATATG CAACGTAGTT GCGTCAATCT GACTCGGTTG ATTTCGGAAT CTAGGCAAGA AATCGTCGTA GTCTCTGTAG CCCATGTCTA CCAGGGTGGT AGGTCGATGC TGTGTAATTC CAGTACCGCA AATAAATATG TGCCGTTCTT TCTGTATAGA CGAAACATCC TATAATACTC CCGAGCTTAG ATATGTACGG GCAGTTGATC CCATCAGTCA GATTAGATTA GTTAGGTTTA TCATTCCTAC AAGAGTTGTG GCTTGAGAAA CACATGTGGT GATGGCCGTT GTAGTCCGTC CTTTGTGGAT GAACAATCAT GTTGTATTGC AACTCTTGGG TGATCAGGTG TTTACTATTC ATTTGGAAGT GAACTTAGAG ACGAGTTCAG AATAATAAGG CATACTACGT GTTGGACAAT GTGCACGACA TGGCATGGAG TTCGCATGCA GGACACCAAC ATGTCTCGGT TACAGAAGTA TACACTGTTG GGAGAGTTAG GACAGTCCTC CGACATCAGC CAGCGGTTCA TGCTGGAATT ATAGTGCTCA AGTTTAAGTT TTGCTGGTCA AGCATTATGA GCTAGAGGAC TATCCAGATC CCAGGAGAAT GGTACGAAAA TTCTCATTCC ATTATGGTGC ATCACACACT ATGCAGTCTT CACGTATTGG GGATAGCACT TTTATTTGGG ATCATATCGT TGAGTAAACC GCTCACCCTG CGAATCTGTA TTTTCTTCGT ATTCCTGATC ACAGTGTGCG GGAATCCTCC CACATAATCT GCCTGATGTG AACGTCTAGG ATCGGTGTAA GCTTTTAATT TGAATTCGTA ATCAACGGCA TGC |
mRNA UTR + CDS |
| >Mp1g16510.2 CTGCAGGGAG AACATGCTCA AAGCCCGGAG CGGAAGGCTT CATCAGTGCC GTGTGTCAGC GCCGGGTGGG AGGTCGACAT CGAGGAGGAG AGTCGTCGAT GATACGAGGA GTAGGTATCC GTCCGGAAGC GGTGCAGAAT GACTCTCCCG AGCGCGCGAT GGACGATTGA AGGGGCTTTG CCGTGGAGGA GTGGCAGCGC AATCTCAAGA AAAATCTCGG GTCTTCTACT ATATTCTCCT GTCTTCCTTT TTGAGTTTGG GCCTTGAAGA GGAGCGGATT GTCTTCCAGT AGAGATTTGC GAGTCTGGAA GCGATGGACA CCGATGCCTC TTCCGCTGCT CCGGCGAAGC CTGGACCACA GATGGATACC AAAATTTGGG CAGGATTCCA CCAAAATTTT AGTCAAGTAC AGTACCTGTT GGATCACAAT CGACTGCTTA TCAATGAAAT CAATCAGAAT CATGAGTCCA AAATTCCCGA AAGTCTCACT CGTAATGTTC TGCTGATTAG AGAGCTCAAC AACAATATCA CTAAAGTTGT TGACTTGTAT GCCAGCCTCT CCGTGTCATT TGTAAAACTT TTTGATAACA ATTCGTCAGA AGAAGACACT ACAAGGGCCT CATCGAAAGC AGGCGAAACG ATTGGAGTCA TGAAACCCCC TCCTGCATCC CAAGGCATGA AGAATGTACG GTCATCTATG GACTAAGTGT TCTGCCCAAT TTGTATATGC AACGTAGTTG CGTCAATCTG ACTCGGTTGA TTTCGGAATC TAGGCAAGAA ATCGTCGTAG TCTCTGTAGC CCATGTCTAC CAGGGTGGTA GGTCGATGCT GTGTAATTCC AGTACCGCAA ATAAATATGT GCCGTTCTTT CTGTATAGAC GAAACATCCT ATAATACTCC CGAGCTTAGA TATGTACGGG CAGTTGATCC CATCAGTCAG ATTAGATTAG TTAGGTTTAT CATTCCTACA AGAGTTGTGG CTTGAGAAAC ACATGTGGTG ATGGCCGTTG TAGTCCGTCC TTTGTGGATG AACAATCATG TTGTATTGCA ACTCTTGGGT GATCAGGTGT TTACTATTCA TTTGGAAGTG AACTTAGAGA CGAGTTCAGA ATAATAAGGC ATACTACGTG TTGGACAATG TGCACGACAT GGCATGGAGT TCGCATGCAG GACACCAACA TGTCTCGGTT ACAGAAGTAT ACACTGTTGG GAGAGTTAGG ACAGTCCTCC GACATCAGCC AGCGGTTCAT GCTGGAATTA TAGTGCTCAA GTTTAAGTTT TGCTGGTCAA GCATTATGAG CTAGAGGACT ATCCAGATCC CAGGAGAATG GTACGAAAAT TCTCATTCCA TTATGGTGCA TCACACACTA TGCAGTCTTC ACGTATTGGG GATAGCACTT TTATTTGGGA TCATATCGTT GAGTAAACCG CTCACCCTGC GAATCTGTAT TTTCTTCGTA TTCCTGATCA CAGTGTGCGG GAATCCTCCC ACATAATCTG CCTGATGTGA ACGTCTAGGA TCGGTGTAAG CTTTTAATTT GAATTCGTAA TCAACGGCAT GC |
CDS |
| >Mp1g16510.2 ATGGACACCG ATGCCTCTTC CGCTGCTCCG GCGAAGCCTG GACCACAGAT GGATACCAAA ATTTGGGCAG GATTCCACCA AAATTTTAGT CAAGTACAGT ACCTGTTGGA TCACAATCGA CTGCTTATCA ATGAAATCAA TCAGAATCAT GAGTCCAAAA TTCCCGAAAG TCTCACTCGT AATGTTCTGC TGATTAGAGA GCTCAACAAC AATATCACTA AAGTTGTTGA CTTGTATGCC AGCCTCTCCG TGTCATTTGT AAAACTTTTT GATAACAATT CGTCAGAAGA AGACACTACA AGGGCCTCAT CGAAAGCAGG CGAAACGATT GGAGTCATGA AACCCCCTCC TGCATCCCAA GGCATGAAGA ATGTACGGTC ATCTATGGAC TAA |
Protein |
| >Mp1g16510.2 MDTDASSAAP AKPGPQMDTK IWAGFHQNFS QVQYLLDHNR LLINEINQNH ESKIPESLTR NVLLIRELNN NITKVVDLYA SLSVSFVKLF DNNSSEEDTT RASSKAGETI GVMKPPPASQ GMKNVRSSMD |
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp1g16510.1 GCAGGGAGAA CATGCTCAAA GCCCGGAGCG GAAGGCTTCA TCAGTGCCGT GTGTCAGCGC CGGGTGGGAG GTCGACATCG AGGAGGAGAG TCGTCGATGA TACGAGGAGT AGGTATCCGT CCGGAAGCGG TGCAGAATGA CTCTCCCGAG CGCGCGATGG ACGATTGAAG GGGCTTTGCC GTGGAGGAGT GGCAGCGCAA TCTCAAGAAA AATCTCGGGT CTTCTACTAT ATTCTCCTGT CTTCCTTTTT GAGTTTGGGC CTTGAAGGTG AGACTCAAGT GCCCCGTTTC CCGCCTTCTT GTGGTTTCCT GACGGAGCAG GATATCTGCT GTTCTGCTCA CCTCGTGCTC GATTCTAGGT CTGTTTCAAC GAAACTGGAT AGAGTGATTG AATCTTTGTG CATTCATTCG TACTTGCTCC CTCGTGTTGG ATTCCCCACC GTCGAGGAAT TTTCTTAGAG CAGGAGACAG AATGTTCCGT CCCCCACCAT CCTGTAGTGA AAGTCTGCGA TGTTTTTTTT CTAGCTTGGG GACTTCTTTC GACATTGGGA TGGCTATACT CTGAGTAGTA CTTGGAAAGG CACGGTCGTG TTTGTTGCAA GTGGATTAGA AAGTGCGCAA CGAGAGTAGT CAGCTCAATG TTATCAGCAC GTACGCCTGA CTTTGCTGGT CGTTCAGAAG GTGGCAGCCG TTTTGTGAGA AGTGCTCGTC CAGTGTTTGG CTGAATTTCG TGTTGTTTTT TTTGGGGGCC GTGTCTAGAG GAGCGGATTG TCTTCCAGTA GAGATTTGCG AGTCTGGAAG CGATGGACAC CGATGCCTCT TCCGCTGCTC CGGCGAAGCC TGGACCACAG ATGGATACCA AAATTTGGGC AGGATTCCAC CAAAATTTTA GTCAAGTACA GTACCTGTTG GATCACAATC GACTGCTTAT CAATGAAATC AATCAGAATC ATGAGTCCAA AATTCCCGAA AGTCTCACTC GTAATGTTCT GCTGATTAGA GAGCTCAACA ACAATATCAC TAAAGTTGTT GACTTGTATG CCAGCCTCTC CGTGTCATTT GTAAAACTTT TTGATAACAA TTCGTCAGAA GAAGACACTA CAAGGGCCTC ATCGAAAGCA GGCGAAACGA TTGGAGTCAT GAAACCCCCT CCTGCATCCC AAGGCATGAA GAATGTACGG TCATCTATGG ACTAAGTGTT CTGCCCAATT TGTATATGCA ACGTAGTTGC GTCAATCTGA CTCGGTTGAT TTCGGAATCT AGGCAAGAAA TCGTCGTAGT CTCTGTAGCC CATGTCTACC AGGGTGGTAG GTCGATGCTG TGTAATTCCA GTACCGCAAA TAAATATGTG CCGTTCTTTC TGTATAGACG AAACATCCTA TAATACTCCC GAGCTTAGAT ATGTACGGGC AGTTGATCCC ATCAGTCAGA TTAGATTAGT TAGGTTTATC ATTCCTACAA GAGTTGTGGC TTGAGAAACA CATGTGGTGA TGGCCGTTGT AGTCCGTCCT TTGTGGATGA ACAATCATGT TGTATTGCAA CTCTTGGGTG ATCAGGTGTT TACTATTCAT TTGGAAGTGA ACTTAGAGAC GAGTTCAGAA TAATAAGGCA TACTACGTGT TGGACAATGT GCACGACATG GCATGGAGTT CGCATGCAGG ACACCAACAT GTCTCGGTTA CAGAAGTATA CACTGTTGGG AGAGTTAGGA CAGTCCTCCG ACATCAGCCA GCGGTTCATG CTGGAATTAT AGTGCTCAAG TTTAAGTTTT GCTGGTCAAG CATTATGAGC TAGAGGACTA TCCAGATCCC AGGAGAATGG TACGAAAATT CTCATTCCAT TATGGTGCAT CACACACTAT GCAGTCTTCA CGTATTGGGG ATAGCACTTT TATTTGGGAT CATATCGTTG AGTAAACCGC TCACCCTGCG AATCTGTATT TTCTTCGTAT TCCTGATCAC AGTGTGCGGG AATCCTCCCA CATAATCTGC CTGATGTGAA CGTCTAGGAT CGGTGTAAGC TTTTAATTTG AATTCGTAAT CAACGG |
mRNA UTR + CDS |
| >Mp1g16510.1 GCAGGGAGAA CATGCTCAAA GCCCGGAGCG GAAGGCTTCA TCAGTGCCGT GTGTCAGCGC CGGGTGGGAG GTCGACATCG AGGAGGAGAG TCGTCGATGA TACGAGGAGT AGGTATCCGT CCGGAAGCGG TGCAGAATGA CTCTCCCGAG CGCGCGATGG ACGATTGAAG GGGCTTTGCC GTGGAGGAGT GGCAGCGCAA TCTCAAGAAA AATCTCGGGT CTTCTACTAT ATTCTCCTGT CTTCCTTTTT GAGTTTGGGC CTTGAAGGTG AGACTCAAGT GCCCCGTTTC CCGCCTTCTT GTGGTTTCCT GACGGAGCAG GATATCTGCT GTTCTGCTCA CCTCGTGCTC GATTCTAGAG GAGCGGATTG TCTTCCAGTA GAGATTTGCG AGTCTGGAAG CGATGGACAC CGATGCCTCT TCCGCTGCTC CGGCGAAGCC TGGACCACAG ATGGATACCA AAATTTGGGC AGGATTCCAC CAAAATTTTA GTCAAGTACA GTACCTGTTG GATCACAATC GACTGCTTAT CAATGAAATC AATCAGAATC ATGAGTCCAA AATTCCCGAA AGTCTCACTC GTAATGTTCT GCTGATTAGA GAGCTCAACA ACAATATCAC TAAAGTTGTT GACTTGTATG CCAGCCTCTC CGTGTCATTT GTAAAACTTT TTGATAACAA TTCGTCAGAA GAAGACACTA CAAGGGCCTC ATCGAAAGCA GGCGAAACGA TTGGAGTCAT GAAACCCCCT CCTGCATCCC AAGGCATGAA GAATGTACGG TCATCTATGG ACTAAGTGTT CTGCCCAATT TGTATATGCA ACGTAGTTGC GTCAATCTGA CTCGGTTGAT TTCGGAATCT AGGCAAGAAA TCGTCGTAGT CTCTGTAGCC CATGTCTACC AGGGTGGTAG GTCGATGCTG TGTAATTCCA GTACCGCAAA TAAATATGTG CCGTTCTTTC TGTATAGACG AAACATCCTA TAATACTCCC GAGCTTAGAT ATGTACGGGC AGTTGATCCC ATCAGTCAGA TTAGATTAGT TAGGTTTATC ATTCCTACAA GAGTTGTGGC TTGAGAAACA CATGTGGTGA TGGCCGTTGT AGTCCGTCCT TTGTGGATGA ACAATCATGT TGTATTGCAA CTCTTGGGTG ATCAGGTGTT TACTATTCAT TTGGAAGTGA ACTTAGAGAC GAGTTCAGAA TAATAAGGCA TACTACGTGT TGGACAATGT GCACGACATG GCATGGAGTT CGCATGCAGG ACACCAACAT GTCTCGGTTA CAGAAGTATA CACTGTTGGG AGAGTTAGGA CAGTCCTCCG ACATCAGCCA GCGGTTCATG CTGGAATTAT AGTGCTCAAG TTTAAGTTTT GCTGGTCAAG CATTATGAGC TAGAGGACTA TCCAGATCCC AGGAGAATGG TACGAAAATT CTCATTCCAT TATGGTGCAT CACACACTAT GCAGTCTTCA CGTATTGGGG ATAGCACTTT TATTTGGGAT CATATCGTTG AGTAAACCGC TCACCCTGCG AATCTGTATT TTCTTCGTAT TCCTGATCAC AGTGTGCGGG AATCCTCCCA CATAATCTGC CTGATGTGAA CGTCTAGGAT CGGTGTAAGC TTTTAATTTG AATTCGTAAT CAACGG |
CDS |
| >Mp1g16510.1 ATGGACACCG ATGCCTCTTC CGCTGCTCCG GCGAAGCCTG GACCACAGAT GGATACCAAA ATTTGGGCAG GATTCCACCA AAATTTTAGT CAAGTACAGT ACCTGTTGGA TCACAATCGA CTGCTTATCA ATGAAATCAA TCAGAATCAT GAGTCCAAAA TTCCCGAAAG TCTCACTCGT AATGTTCTGC TGATTAGAGA GCTCAACAAC AATATCACTA AAGTTGTTGA CTTGTATGCC AGCCTCTCCG TGTCATTTGT AAAACTTTTT GATAACAATT CGTCAGAAGA AGACACTACA AGGGCCTCAT CGAAAGCAGG CGAAACGATT GGAGTCATGA AACCCCCTCC TGCATCCCAA GGCATGAAGA ATGTACGGTC ATCTATGGAC TAA |
Protein |
| >Mp1g16510.1 MDTDASSAAP AKPGPQMDTK IWAGFHQNFS QVQYLLDHNR LLINEINQNH ESKIPESLTR NVLLIRELNN NITKVVDLYA SLSVSFVKLF DNNSSEEDTT RASSKAGETI GVMKPPPASQ GMKNVRSSMD |