Mp1g17560



Description

Annotation

Database ID Description
Gene3D G3DSA:2.160.20.10 -
SUPERFAMILY SSF51126 Pectin lyase-like
ProSitePatterns PS00503 Pectinesterase signature 2.
MobiDBLite mobidb-lite consensus disorder prediction
FunFam G3DSA:2.160.20.10:FF:000008 Pectinesterase
Pfam PF01095 Pectinesterase
PANTHER PTHR31321 ACYL-COA THIOESTER HYDROLASE YBHC-RELATED
KEGG K01051 pectinesterase [EC:3.1.1.11]
MapolyID Mapoly0001s0096 -
GO GO:0030599 pectinesterase activity
GO GO:0045490 pectin catabolic process
GO GO:0052689 carboxylic ester hydrolase activity
GO GO:0042545 cell wall modification

Nomenclature

Gene symbol Product Transcript ID Status
MpCE8.2 Cell wall related protein Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp1g17560.1 chr1:18359813..18363776 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g17560.2 chr1:18359599..18363918 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g17560 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g17560 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.