Mp1g18750
Description
Annotation
| Database | ID | Description |
|---|---|---|
| Pfam | PF09753 | Membrane fusion protein Use1 |
| PANTHER | PTHR13050 | USE1-LIKE PROTEIN |
| Coils | Coil | Coil |
| KEGG | K08507 | unconventional SNARE in the endoplasmic reticulum protein 1 |
| MapolyID | Mapoly0001s0213 | - |
| GO | GO:0005783 | endoplasmic reticulum |
| GO | GO:0031201 | SNARE complex |
| GO | GO:0005484 | SNAP receptor activity |
| GO | GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpUSE1A | Ortholog of Arabidopsis USE1 genes | Published |
Associated Literature (AI-based literature mining, Beta-version)
Ortholog of Arabidopsis USE1 genes; The transcript is detected in thalli, antheridiophores, archegoniophores, and sporelings. Citrine-tagged MpUSE1A driven by the cauliflower mosaic virus 35S promoter is localized to the endoplasmic reticulum. (from nomenclature)
0 core 2 peripheral
Wachananawat, B., et al. (2020)
· Frontiers in Plant Science research experimental tool
Endoplasmic reticulum marker (pro35S:MpUSE1A-Citrine) co-transformed with MpRRT1-tagRFP to compare subcellular localization; not characterized itself.
Kanazawa, T., et al. (2020)
· Nature Communications research experimental tool
ER SNARE marker; compartment control.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp1g18750 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp1g18750.1 GAAGTTCACG GGAGCCTGTG GGAGATCGGA GCTTCGACGC TGGACGAATT CGAGAGGAGG CGCAGCGAGG AAGGCGTCGG AACACGGTGG AACACGGTGG AACGGCCGAG GGAGGAAGCG ACTGTCGCTC GGCGTTCTTC GTTCTGCTCC AGGCTCGTGC GATTTGGGCA TGGATCGAAT CGGGATGCGC TCCTAGATTG GGTGGGCCTT TTTCTTGCTG GTAGCTTGCC ATGGGAATTT CGCAAGCGGA AGTGAAATTG AGAAGGTTAC TGGCTGCGGC TCCTCGCCAG AGCAATCACG CCAAGTTGCT TCATTATGTC GCGGCCATGC GGGAGCAGTT GGCTCTGCTT ACCGGAGGAG GAGGAGGAGG AGTCGAGGGC TTGAATCAGG ATCTCCGCCA CATCTCCGAG GCTAAAGCAG CCGAGTACGC CAAGAGCATC GATGAGGTTG CGGAGAAAAT CGATACCGGC ACATCACCCG ACGTTTGGGA ATCGCTGCGA AGCATCGATG ACGTCGGGAT GAATTGTAGA CCTAGATTGG ATGTCGAGAT GGATGAGCCT ATGCTCGCCC CTCCAACTCT CTCTCCTAAC CTCAGAAGAC GAAGATTGCA GATGAAAGAA CAGGATGAAG AGAAGAAGGT GGAAGGTCTG AAGCTGGATG CCGCGTCAAA CGAAACGATC AGCAAGCATC GACAGATTCA AGAGGCTTTG ACGGATGAGA TGGCTCTTCT GTCCGAGCAG ATGAAGAACA ATAGCTATAT GCTGGAGAAG ACATTAAAGG ACACGGGTTA TCTCGTGGAC GATGCCGGGG CAGCAGTGGA GGTCAATATA GGCGCCACAA ATCGCGTCAA TGAGAGGGCC GGCATAATAT ACAAGTCGAA TTGGAAAACT GGTTGTTACA CCTGGTTGAT ACTCATTCTT ATGATCTTCA TTTTTATCTT TATGGTTGGG TTGATAAGGC TCACTGGTTA GAGCTTTTGA AATATCCGAA CACTTTGTTG CAAACTGAAC TATGTACCCA CTACTGGCAG CCGGGTCTTG CCAGGCCATC AGCCGTGATT CTTCTCTCAG CTGAATACGA GCTGACAAGT CTACAGACGA AAGCATCTTC TGGCAATTGG CCTGCGGGTA GTGGGATAGT TCACGAGGTC ATCCGAAGTA TGCTCACATG CGCCTGTGAA TAATCCTTCA CATTGGAACT TTTTAACGAC CTACAAGACC TGCGGGAAAT AGAGACTTTC AGAATCTGGA AGCATTCGGG TTGATTCGGA TTAAGTGAGA GTCCAGGTGC TGTTTCTATG ATCATTCGAA AATTGCAGAC CTTGTTAGTA AGAAAACATG GAAAGACCTC ATTGTGATGG CTTCCTCTTC AGATGTGCAA TTTCCAGATT TATGGTCTGT ATTAAGAACT TGGAACTCAA GTACAAAACT TAGGGGAAAA GCTCCCTCTT CAAGCGTTGC TGAGGATAAG CTCCTCAGAT GTAGCAACTT AGAAGATAGA GGAGCTGGCC TTTCAGATTT CTATAAGAAA GTTGTTAGTT GTACATGTAT CTTTTTCAGA TAGTATTGGT TTCTTTCTGG CTGTTTCTGG ATGAAAGGAG GAGCACCCAT AGCCTTCGCT TGAGTTCACG GCACAGACCA TAGATCAATC TGTTCTTGCC ACTTGTAAAA TATGCACGTC AACATGGTGG TGTCCTTTTA CATCTG |
mRNA UTR + CDS |
| >Mp1g18750.1 GAAGTTCACG GGAGCCTGTG GGAGATCGGA GCTTCGACGC TGGACGAATT CGAGAGGAGG CGCAGCGAGG AAGGCGTCGG AACACGGTGG AACACGGTGG AACGGCCGAG GGAGGAAGCG ACTGTCGCTC GGCGTTCTTC GTTCTGCTCC AGGCTCGTGC GATTTGGGCA TGGATCGAAT CGGGATGCGC TCCTAGATTG GGTGGGCCTT TTTCTTGCTG GTAGCTTGCC ATGGGAATTT CGCAAGCGGA AGTGAAATTG AGAAGGTTAC TGGCTGCGGC TCCTCGCCAG AGCAATCACG CCAAGTTGCT TCATTATGTC GCGGCCATGC GGGAGCAGTT GGCTCTGCTT ACCGGAGGAG GAGGAGGAGG AGTCGAGGGC TTGAATCAGG ATCTCCGCCA CATCTCCGAG GCTAAAGCAG CCGAGTACGC CAAGAGCATC GATGAGGTTG CGGAGAAAAT CGATACCGGC ACATCACCCG ACGTTTGGGA ATCGCTGCGA AGCATCGATG ACGTCGGGAT GAATTGTAGA CCTAGATTGG ATGTCGAGAT GGATGAGCCT ATGCTCGCCC CTCCAACTCT CTCTCCTAAC CTCAGAAGAC GAAGATTGCA GATGAAAGAA CAGGATGAAG AGAAGAAGGT GGAAGGTCTG AAGCTGGATG CCGCGTCAAA CGAAACGATC AGCAAGCATC GACAGATTCA AGAGGCTTTG ACGGATGAGA TGGCTCTTCT GTCCGAGCAG ATGAAGAACA ATAGCTATAT GCTGGAGAAG ACATTAAAGG ACACGGGTTA TCTCGTGGAC GATGCCGGGG CAGCAGTGGA GGTCAATATA GGCGCCACAA ATCGCGTCAA TGAGAGGGCC GGCATAATAT ACAAGTCGAA TTGGAAAACT GGTTGTTACA CCTGGTTGAT ACTCATTCTT ATGATCTTCA TTTTTATCTT TATGGTTGGG TTGATAAGGC TCACTGGTTA GAGCTTTTGA AATATCCGAA CACTTTGTTG CAAACTGAAC TATGTACCCA CTACTGGCAG CCGGGTCTTG CCAGGCCATC AGCCGTGATT CTTCTCTCAG CTGAATACGA GCTGACAAGT CTACAGACGA AAGCATCTTC TGGCAATTGG CCTGCGGGTA GTGGGATAGT TCACGAGGTC ATCCGAAGTA TGCTCACATG CGCCTGTGAA TAATCCTTCA CATTGGAACT TTTTAACGAC CTACAAGACC TGCGGGAAAT AGAGACTTTC AGAATCTGGA AGCATTCGGG TTGATTCGGA TTAAGTGAGA GTCCAGGTGC TGTTTCTATG ATCATTCGAA AATTGCAGAC CTTGTTAGTA AGAAAACATG GAAAGACCTC ATTGTGATGG CTTCCTCTTC AGATGTGCAA TTTCCAGATT TATGGTCTGT ATTAAGAACT TGGAACTCAA GTACAAAACT TAGGGGAAAA GCTCCCTCTT CAAGCGTTGC TGAGGATAAG CTCCTCAGAT GTAGCAACTT AGAAGATAGA GGAGCTGGCC TTTCAGATTT CTATAAGAAA GTTGTTAGTT GTACATGTAT CTTTTTCAGA TAGTATTGGT TTCTTTCTGG CTGTTTCTGG ATGAAAGGAG GAGCACCCAT AGCCTTCGCT TGAGTTCACG GCACAGACCA TAGATCAATC TGTTCTTGCC ACTTGTAAAA TATGCACGTC AACATGGTGG TGTCCTTTTA CATCTG |
CDS |
| >Mp1g18750.1 ATGGGAATTT CGCAAGCGGA AGTGAAATTG AGAAGGTTAC TGGCTGCGGC TCCTCGCCAG AGCAATCACG CCAAGTTGCT TCATTATGTC GCGGCCATGC GGGAGCAGTT GGCTCTGCTT ACCGGAGGAG GAGGAGGAGG AGTCGAGGGC TTGAATCAGG ATCTCCGCCA CATCTCCGAG GCTAAAGCAG CCGAGTACGC CAAGAGCATC GATGAGGTTG CGGAGAAAAT CGATACCGGC ACATCACCCG ACGTTTGGGA ATCGCTGCGA AGCATCGATG ACGTCGGGAT GAATTGTAGA CCTAGATTGG ATGTCGAGAT GGATGAGCCT ATGCTCGCCC CTCCAACTCT CTCTCCTAAC CTCAGAAGAC GAAGATTGCA GATGAAAGAA CAGGATGAAG AGAAGAAGGT GGAAGGTCTG AAGCTGGATG CCGCGTCAAA CGAAACGATC AGCAAGCATC GACAGATTCA AGAGGCTTTG ACGGATGAGA TGGCTCTTCT GTCCGAGCAG ATGAAGAACA ATAGCTATAT GCTGGAGAAG ACATTAAAGG ACACGGGTTA TCTCGTGGAC GATGCCGGGG CAGCAGTGGA GGTCAATATA GGCGCCACAA ATCGCGTCAA TGAGAGGGCC GGCATAATAT ACAAGTCGAA TTGGAAAACT GGTTGTTACA CCTGGTTGAT ACTCATTCTT ATGATCTTCA TTTTTATCTT TATGGTTGGG TTGATAAGGC TCACTGGTTA G |
Protein |
| >Mp1g18750.1 MGISQAEVKL RRLLAAAPRQ SNHAKLLHYV AAMREQLALL TGGGGGGVEG LNQDLRHISE AKAAEYAKSI DEVAEKIDTG TSPDVWESLR SIDDVGMNCR PRLDVEMDEP MLAPPTLSPN LRRRRLQMKE QDEEKKVEGL KLDAASNETI SKHRQIQEAL TDEMALLSEQ MKNNSYMLEK TLKDTGYLVD DAGAAVEVNI GATNRVNERA GIIYKSNWKT GCYTWLILIL MIFIFIFMVG LIRLTG |