Mp1g18940
Description
Annotation
| Database | ID | Description |
|---|---|---|
| PANTHER | PTHR10746 | 50S RIBOSOMAL PROTEIN L4 |
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| Hamap | MF_01328_B | 50S ribosomal protein L4 [rplD]. |
| FunFam | G3DSA:3.40.1370.10:FF:000012 | 50S ribosomal protein L4 |
| NCBIfam | TIGR03953 | 50S ribosomal protein L4 |
| Pfam | PF00573 | Ribosomal protein L4/L1 family |
| SUPERFAMILY | SSF52166 | Ribosomal protein L4 |
| Gene3D | G3DSA:3.40.1370.10 | - |
| KEGG | K02926 | large subunit ribosomal protein L4 |
| KOG | KOG1624 | Mitochondrial/chloroplast ribosomal protein L4; [J] |
| MapolyID | Mapoly0001s0232 | - |
| GO | GO:0003735 | structural constituent of ribosome |
| GO | GO:0005840 | ribosome |
| GO | GO:0006412 | translation |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpPRPL | Provisional |
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp1g18940 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp1g18940.1 GCAGCCGAGG CCGAGGCCAT GGGGTGCCAT TGAAAGAAGG GCGAAGTGCG GGGGCCGTAG TTTTGCGCAG CGGTGGTGGA GATGGCGTCT TCGTGCGGAG CTGCAGCGAC GACAATGCTG GCGCAGTCGA CAGCAGGGCT CGCGGCGCTG GGGTTCTCGG CCTCGAGCGT GAATGTGCCG ACGCCCGCGG GCTTCAGCGG GCTGCGGGCG CTCGCGCCGC TGAAGAAGAA TGCGCTCGTC GCAGGCCGAA ATGCGCACAA ATGCGCCGGC GTGGTGATGG CCGCCGTGGC CATTCCCGTC ATCACCTTCG ATGGCGCCTC GGCCGGCGAG CAGACGATCA GCCTGAAATC CGCGCGCCCT GAGACGGCCG GGGCCGTGGT GCACCGAGGC GTAATTACCG AGCTTCAGAA CCGCAGGCGT GGAACGGCCT CGACCTTGAC TCGCTCCGAG GTGCGGGGCG GAGGCCGCAA GCCTTTCAAG CAAAAGGGCA CCGGGCAGGC GCGTCGCGGT TCTCAGAGGA CCCCTCTGCG CCCCGGAGGA GGTGTGGTGT TCGGGCCCAA GCCCGTGGAT TGGCGCATCA AGATCAACAA GAAGGAGAAG CAGTTGGCCA TCAGCACTGC CCTCCAGAGC GCCGCCGTGG ACGCGCTGGT GGTGGATGAT CTCGAGACCG GGCTCACCGC CCCGAAGACC AAGGAATTCC TGGCCGCCTT GAAGCGGTGG GGCGTGAGCC CTGCCCAGTA CTCGGTTATT TTCACCACGG AGGTTTCCAA AGAGCTGGAG CTGTCGAGCC GGAACATCAA GACCGTGAAG ATTCTGACTC CGCGCTCTTT GAATCTCTAC GACGTTTTGC GGGCCGACAA GCTCCTATTT ACCAAAGCCG GCTTGGAGTA TTTGAACAAC ACGTACGGTG CTGAAGACTA TGCCGATTTT GAGGAAGGCG ATATTATCGA GACCCAGGCC GAAGACGCTG CCACGGTGGC CGATGTAGAA TGAACCATTC CTTCTTTCCA GTGTTAGTAA CTAAGTTAAA GACCCGACGA ACTTGCACGC TAGCCAGTCT TTGTACTTTT GCAGGAACGC GCTTCATGTC GGTTGTAAAA GGCTGGATTA TTTCTCCTCC TGGTCGCTGG CCCTTCTTCC ACACTTTGCA GTTAGGATTC CCACACTCCG TATGTAAGTT AAATGATTCA TACCAGCACC AGCAAGGAAT TTTACCTTCG GCTACATCAA AATCAGGAGG AGAGCAATTT AGGTACTTTC CAGCAATGGC TGTACATCTT AGGATCGTAA AAGATTTTTG AATTAAAGTC AGATACGGTT CATTGAATGG GATGGCATTT TCACATGACG AAGAAACTCG GTACCTGTCG AAGCATTGAA CTAGACGTCT GTCTCTGACC TGAACCCTCG TCTGTAACTA ATTGACCCGA AAACCAAATT CACATATCTT TCTGTATGTA CCGGCTTCTC GACGTGTTCC GACATTGATG ACCTCTTTTC CTTAATCTGT TTCTCTTCAC GTCGAATTAA TGCGAAGCTT GTTTGTTATT CGGGAATGTT TACTCATC |
mRNA UTR + CDS |
| >Mp1g18940.1 GCAGCCGAGG CCGAGGCCAT GGGGTGCCAT TGAAAGAAGG GCGAAGTGCG GGGGCCGTAG TTTTGCGCAG CGGTGGTGGA GATGGCGTCT TCGTGCGGAG CTGCAGCGAC GACAATGCTG GCGCAGTCGA CAGCAGGGCT CGCGGCGCTG GGGTTCTCGG CCTCGAGCGT GAATGTGCCG ACGCCCGCGG GCTTCAGCGG GCTGCGGGCG CTCGCGCCGC TGAAGAAGAA TGCGCTCGTC GCAGGCCGAA ATGCGCACAA ATGCGCCGGC GTGGTGATGG CCGCCGTGGC CATTCCCGTC ATCACCTTCG ATGGCGCCTC GGCCGGCGAG CAGACGATCA GCCTGAAATC CGCGCGCCCT GAGACGGCCG GGGCCGTGGT GCACCGAGGC GTAATTACCG AGCTTCAGAA CCGCAGGCGT GGAACGGCCT CGACCTTGAC TCGCTCCGAG GTGCGGGGCG GAGGCCGCAA GCCTTTCAAG CAAAAGGGCA CCGGGCAGGC GCGTCGCGGT TCTCAGAGGA CCCCTCTGCG CCCCGGAGGA GGTGTGGTGT TCGGGCCCAA GCCCGTGGAT TGGCGCATCA AGATCAACAA GAAGGAGAAG CAGTTGGCCA TCAGCACTGC CCTCCAGAGC GCCGCCGTGG ACGCGCTGGT GGTGGATGAT CTCGAGACCG GGCTCACCGC CCCGAAGACC AAGGAATTCC TGGCCGCCTT GAAGCGGTGG GGCGTGAGCC CTGCCCAGTA CTCGGTTATT TTCACCACGG AGGTTTCCAA AGAGCTGGAG CTGTCGAGCC GGAACATCAA GACCGTGAAG ATTCTGACTC CGCGCTCTTT GAATCTCTAC GACGTTTTGC GGGCCGACAA GCTCCTATTT ACCAAAGCCG GCTTGGAGTA TTTGAACAAC ACGTACGGTG CTGAAGACTA TGCCGATTTT GAGGAAGGCG ATATTATCGA GACCCAGGCC GAAGACGCTG CCACGGTGGC CGATGTAGAA TGAACCATTC CTTCTTTCCA GTGTTAGTAA CTAAGTTAAA GACCCGACGA ACTTGCACGC TAGCCAGTCT TTGTACTTTT GCAGGAACGC GCTTCATGTC GGTTGTAAAA GGCTGGATTA TTTCTCCTCC TGGTCGCTGG CCCTTCTTCC ACACTTTGCA GTTAGGATTC CCACACTCCG TATGTAAGTT AAATGATTCA TACCAGCACC AGCAAGGAAT TTTACCTTCG GCTACATCAA AATCAGGAGG AGAGCAATTT AGGTACTTTC CAGCAATGGC TGTACATCTT AGGATCGTAA AAGATTTTTG AATTAAAGTC AGATACGGTT CATTGAATGG GATGGCATTT TCACATGACG AAGAAACTCG GTACCTGTCG AAGCATTGAA CTAGACGTCT GTCTCTGACC TGAACCCTCG TCTGTAACTA ATTGACCCGA AAACCAAATT CACATATCTT TCTGTATGTA CCGGCTTCTC GACGTGTTCC GACATTGATG ACCTCTTTTC CTTAATCTGT TTCTCTTCAC GTCGAATTAA TGCGAAGCTT GTTTGTTATT CGGGAATGTT TACTCATC |
CDS |
| >Mp1g18940.1 ATGGCGTCTT CGTGCGGAGC TGCAGCGACG ACAATGCTGG CGCAGTCGAC AGCAGGGCTC GCGGCGCTGG GGTTCTCGGC CTCGAGCGTG AATGTGCCGA CGCCCGCGGG CTTCAGCGGG CTGCGGGCGC TCGCGCCGCT GAAGAAGAAT GCGCTCGTCG CAGGCCGAAA TGCGCACAAA TGCGCCGGCG TGGTGATGGC CGCCGTGGCC ATTCCCGTCA TCACCTTCGA TGGCGCCTCG GCCGGCGAGC AGACGATCAG CCTGAAATCC GCGCGCCCTG AGACGGCCGG GGCCGTGGTG CACCGAGGCG TAATTACCGA GCTTCAGAAC CGCAGGCGTG GAACGGCCTC GACCTTGACT CGCTCCGAGG TGCGGGGCGG AGGCCGCAAG CCTTTCAAGC AAAAGGGCAC CGGGCAGGCG CGTCGCGGTT CTCAGAGGAC CCCTCTGCGC CCCGGAGGAG GTGTGGTGTT CGGGCCCAAG CCCGTGGATT GGCGCATCAA GATCAACAAG AAGGAGAAGC AGTTGGCCAT CAGCACTGCC CTCCAGAGCG CCGCCGTGGA CGCGCTGGTG GTGGATGATC TCGAGACCGG GCTCACCGCC CCGAAGACCA AGGAATTCCT GGCCGCCTTG AAGCGGTGGG GCGTGAGCCC TGCCCAGTAC TCGGTTATTT TCACCACGGA GGTTTCCAAA GAGCTGGAGC TGTCGAGCCG GAACATCAAG ACCGTGAAGA TTCTGACTCC GCGCTCTTTG AATCTCTACG ACGTTTTGCG GGCCGACAAG CTCCTATTTA CCAAAGCCGG CTTGGAGTAT TTGAACAACA CGTACGGTGC TGAAGACTAT GCCGATTTTG AGGAAGGCGA TATTATCGAG ACCCAGGCCG AAGACGCTGC CACGGTGGCC GATGTAGAAT GA |
Protein |
| >Mp1g18940.1 MASSCGAAAT TMLAQSTAGL AALGFSASSV NVPTPAGFSG LRALAPLKKN ALVAGRNAHK CAGVVMAAVA IPVITFDGAS AGEQTISLKS ARPETAGAVV HRGVITELQN RRRGTASTLT RSEVRGGGRK PFKQKGTGQA RRGSQRTPLR PGGGVVFGPK PVDWRIKINK KEKQLAISTA LQSAAVDALV VDDLETGLTA PKTKEFLAAL KRWGVSPAQY SVIFTTEVSK ELELSSRNIK TVKILTPRSL NLYDVLRADK LLFTKAGLEY LNNTYGAEDY ADFEEGDIIE TQAEDAATVA DVE |