Mp1g20110



Description

Annotation

Database ID Description
Gene3D G3DSA:3.40.800.20 Histone deacetylase domain
MobiDBLite mobidb-lite consensus disorder prediction
PRINTS PR01270 Histone deacetylase superfamily signature
SUPERFAMILY SSF52768 Arginase/deacetylase
PANTHER PTHR10625 HISTONE DEACETYLASE HDAC1-RELATED
Pfam PF00850 Histone deacetylase domain
FunFam G3DSA:3.40.800.20:FF:000014 Histone deacetylase 15
ProSitePatterns PS01358 Zinc finger RanBP2-type signature.
KOG KOG1343 Histone deacetylase complex, catalytic component HDA1; N-term missing; [B]
KOG KOG4364 Chromatin assembly factor-I; N-term missing; C-term missing; [B]
MapolyID Mapoly0001s0348 -
GO GO:0016575 obsolete histone deacetylation
GO GO:0000122 negative regulation of transcription by RNA polymerase II
GO GO:0008134 transcription factor binding
GO GO:0004407 histone deacetylase activity
GO GO:0000118 histone deacetylase complex
GO GO:0005737 cytoplasm

Nomenclature

Gene symbol Product Transcript ID Status
MpHDAC3 Chromatin related protein Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp1g20110.1 chr1:21077616..21093573 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g20110.2 chr1:21077616..21093573 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g20110.3 chr1:21077616..21093573 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g20110.4 chr1:21077616..21093573 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g20110 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g20110 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.