Mp1g20580



Description

Annotation

Database ID Description
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Pfam PF00560 Leucine Rich Repeat
Coils Coil Coil
PRINTS PR00364 Disease resistance protein signature
SUPERFAMILY SSF52058 L domain-like
Pfam PF00931 NB-ARC domain
Gene3D G3DSA:1.10.8.430 -
Gene3D G3DSA:3.40.50.300 -
PANTHER PTHR45752 LEUCINE-RICH REPEAT-CONTAINING
MobiDBLite mobidb-lite consensus disorder prediction
KOG KOG4658 Apoptotic ATPase; [T]
MapolyID Mapoly0001s0394 -
GO GO:0007165 signal transduction
GO GO:0043531 ADP binding
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpNBS-LRR2 NBS genes Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp1g20580.1 chr1:21615114..21622318 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g20580 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g20580 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.