Mp1g21080



Description

Annotation

Database ID Description
CDD cd04123 Rab21
FunFam G3DSA:3.40.50.300:FF:000550 ras-related protein Rab-21
Gene3D G3DSA:3.40.50.300 -
KEGG K07890 Ras-related protein Rab-21
KOG KOG0088 GTPase Rab21, small G protein superfamily; [R]
MobiDBLite mobidb-lite consensus disorder prediction
NCBIfam TIGR00231 small GTP-binding protein domain
PANTHER PTHR47978 -
PRINTS PR00449 Transforming protein P21 ras signature
Pfam PF00071 Ras family
ProSiteProfiles PS51419 small GTPase Rab1 family profile.
ProSiteProfiles PS51421 small GTPase Ras family profile.
SMART SM00173 ras_sub_4
SMART SM00174 rho_sub_3
SMART SM00175 rab_sub_5
SMART SM00176 ran_sub_2
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
GO GO:0003924 GTPase activity
GO GO:0032482 Rab protein signal transduction
GO GO:0005794 Golgi apparatus
GO GO:0005525 GTP binding
GO GO:0005768 endosome
MapolyID Mapoly0001s0443 -

Nomenclature

Gene symbol Product Transcript ID Status
MpRAB21 RAB GTPase Published

Associated Literature (AI-based literature mining)

RAB GTPase with specific expression/localization in thallus cells.

1 core 0 peripheral

Minamino, N., et al. (2018) · Plant and Cell Physiology  research experimental subject
RAB GTPase with specific expression/localization in thallus cells.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g21080.1 chr1:22103301..22109402 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g21080.2 chr1:22103301..22109402 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g21080 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g21080 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.