Mp1g21090



Description

Annotation

Database ID Description
CDD cd17546 REC_hyHK_CKI1_RcsC-like
CDD cd00082 HisKA
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:3.40.50.2300 -
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
FunFam G3DSA:1.10.287.130:FF:000025 Histidine kinase 1-like protein
Gene3D G3DSA:3.30.565.10 -
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
ProSiteProfiles PS50110 Response regulatory domain profile.
Gene3D G3DSA:1.10.287.130 -
Pfam PF00512 His Kinase A (phospho-acceptor) domain
Pfam PF00072 Response regulator receiver domain
SMART SM00388 HisKA_10
PRINTS PR00344 Bacterial sensor protein C-terminal signature
SMART SM00387 HKATPase_4
SMART SM00448 REC_2
ProSiteProfiles PS50109 Histidine kinase domain profile.
SUPERFAMILY SSF52172 CheY-like
PANTHER PTHR43711 TWO-COMPONENT HISTIDINE KINASE
SUPERFAMILY SSF47384 Homodimeric domain of signal transducing histidine kinase
KOG KOG0519 Sensory transduction histidine kinase; C-term missing; [T]
KOG KOG0519 Sensory transduction histidine kinase; N-term missing; [T]
MapolyID Mapoly0001s0444 -
GO GO:0016772 transferase activity, transferring phosphorus-containing groups
GO GO:0000155 phosphorelay sensor kinase activity
GO GO:0000160 phosphorelay signal transduction system
GO GO:0016310 phosphorylation
GO GO:0007165 signal transduction

Nomenclature

Gene symbol Product Transcript ID Status
MpCache1 Histidine-kinases Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp1g21090.1 chr1:22129669..22138617 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g21090.2 chr1:22129669..22138617 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g21090 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g21090 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.