Mp1g21930



Description

Annotation

Database ID Description
CDD cd01751 PLAT_LH2
FunFam G3DSA:1.20.245.10:FF:000002 Lipoxygenase
Gene3D G3DSA:1.20.245.10 -
Gene3D G3DSA:2.60.60.20 PLAT/LH2 domain
Gene3D G3DSA:3.10.450.60 -
Gene3D G3DSA:4.10.372.10 -
Gene3D G3DSA:4.10.375.10 -
KEGG K00454 lipoxygenase [EC:1.13.11.12]
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR11771 LIPOXYGENASE
PRINTS PR00087 Lipoxygenase signature
PRINTS PR00468 Plant lipoxygenase signature
Pfam PF00305 Lipoxygenase
Pfam PF01477 PLAT/LH2 domain
ProSitePatterns PS00081 Lipoxygenases iron-binding region signature 2.
ProSitePatterns PS00711 Lipoxygenases iron-binding region signature 1.
ProSiteProfiles PS50095 PLAT domain profile.
ProSiteProfiles PS51393 Lipoxygenase iron-binding catalytic domain profile.
SMART SM00308 LH2_4
SUPERFAMILY SSF48484 Lipoxigenase
SUPERFAMILY SSF49723 Lipase/lipooxygenase domain (PLAT/LH2 domain)
GO GO:0046872 metal ion binding
GO GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO GO:0005515 protein binding
GO GO:0034440 lipid oxidation
GO GO:0016491 oxidoreductase activity
MapolyID Mapoly0001s0529 -

Nomenclature

Gene symbol Product Transcript ID Status
MpLOX5 Lipoxygenase Published

Associated Literature (AI-based literature mining)

Lipoxygenase; Mapoly0001s0529.1 (from nomenclature)

0 core 2 peripheral

Briginshaw, L. N., et al. (2022) · New Phytologist  research experimental background
MpLOX5 (LOX2S lipoxygenase); appears in the Table 1 set of genes oppositely regulated between Mpkan and MpKAN-GR plants.
El Mahboubi K, Beaulieu C, Castel B, Libourel C, Jariais N, Amblard E, van Beveren F, Keller J, Martinez Y, Nelson JM, Bonhomme M, Jacquet C, Delaux PM. (2026) · Proceedings of the National Academy of Sciences of the United States of America  research experimental background
Lipoxygenase gene noted among defense/oxylipin loci near GWAS association signals.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g21930.1 chr1:22922878..22928435 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g21930 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g21930 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.