Mp1g23090



Description

Annotation

Database ID Description
KOG KOG2072 Translation initiation factor 3, subunit a (eIF-3a); N-term missing; [J]
KOG KOG2295 C2H2 Zn-finger protein; [R]
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR13165 ARSENITE-RESISTANCE PROTEIN 2
Pfam PF04959 Arsenite-resistance protein 2
Pfam PF12066 SERRATE/Ars2, N-terminal domain
ProSitePatterns PS00028 Zinc finger C2H2 type domain signature.
GO GO:0016604 nuclear body
GO GO:0031053 primary miRNA processing
GO GO:0006397 mRNA processing
MapolyID Mapoly0065s0067 -

Nomenclature

Gene symbol Product Transcript ID Status
MpSE ZINC-FINGER protein Published

Associated Literature (AI-based literature mining)

ZINC-FINGER protein (from nomenclature)

0 core 1 peripheral

Pietrykowska, H., et al. (2022) · Journal of Experimental Botany  review citation background
miRNA biogenesis/effector (Pietrykowska 2022)

Transcript models

Transcript ID Location Sequences Extract region
Mp1g23090.5 chr1:24534120..24541875 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g23090.1 chr1:24534120..24542687 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g23090.2 chr1:24534120..24542687 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g23090.3 chr1:24534120..24542687 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g23090.4 chr1:24534120..24542687 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g23090 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g23090 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.