Mp1g23190



Description

Annotation

Database ID Description
ProSiteProfiles PS50821 PAZ domain profile.
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF02171 Piwi domain
ProSiteProfiles PS50822 Piwi domain profile.
PANTHER PTHR22891 EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
Gene3D G3DSA:3.40.50.2300 -
CDD cd04657 Piwi_ago-like
SMART SM00950 Piwi_a_2
SMART SM01163 DUF1785_2
CDD cd02846 PAZ_argonaute_like
SUPERFAMILY SSF53098 Ribonuclease H-like
Pfam PF16486 N-terminal domain of argonaute
SUPERFAMILY SSF101690 PAZ domain
Gene3D G3DSA:2.170.260.10 paz domain
Pfam PF16488 Argonaute linker 2 domain
Gene3D G3DSA:3.30.420.10 -
Pfam PF02170 PAZ domain
SMART SM00949 PAZ_2_a_3
Pfam PF08699 Argonaute linker 1 domain
KEGG K11593 eukaryotic translation initiation factor 2C
KOG KOG1041 Translation initiation factor 2C (eIF-2C) and related proteins; [J]
MapolyID Mapoly0065s0059 -
GO GO:0004521 RNA endonuclease activity
GO GO:0003723 RNA binding
GO GO:0005515 protein binding
GO GO:0035194 regulatory ncRNA-mediated post-transcriptional gene silencing
GO GO:0005737 cytoplasm
GO GO:0003676 nucleic acid binding

Nomenclature

Gene symbol Product Transcript ID Status
MpAGO4a miRNA biogenesis protein Provisional

Associated Literature (AI-based literature mining, Beta-version)

ARGONAUTE4a; sRNA effector.

1 core 2 peripheral

Tsuzuki, M., et al. (2016) · Plant and Cell Physiology  research experimental subject
ARGONAUTE4a; sRNA effector.
Pietrykowska, H., et al. (2022) · Journal of Experimental Botany  review citation background
miRNA biogenesis/effector (Pietrykowska 2022)
Hong, S.-F., et al. (2024) · Plant & Cell Physiology  research sequence comparator
ARGONAUTE4-like; AGO family member.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g23190.1 chr1:24693629..24700285 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g23190 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g23190 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.