Mp1g24060
Description
Annotation
| Database | ID | Description |
|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| Pfam | PF05183 | RNA dependent RNA polymerase |
| PANTHER | PTHR23079 | RNA-DEPENDENT RNA POLYMERASE |
| KEGG | K11699 | RNA-dependent RNA polymerase [EC:2.7.7.48] |
| KOG | KOG0988 | RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference; N-term missing; [A] |
| MapolyID | Mapoly0061s0115 | - |
| GO | GO:0031380 | nuclear RNA-directed RNA polymerase complex |
| GO | GO:0030422 | siRNA processing |
| GO | GO:0003968 | RNA-dependent RNA polymerase activity |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpRDR1/2-1 | RNA gene silencing, RNA-dependent RNA polymerase | Provisional |
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp1g24060 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp1g24060.1 CATCCTACGT AGTCGAACTC GATAATTCTG ATTTGCCCCA AGATATTTCA TCAGTCCTTT ACCTGACGGG AATCTTCAGC CCAGTTCCTA GAATGTTTAG TATAGAGAAA GGAGTTCCAT ACGCTGCGTC TCAGGTGGTG GTGCCCATGG TCAACCCTGA AAACTTCAGG GTTCCTTTTG ATGTCCTATA TAAGGTAAAT AATTTGATTC AGTTCAACAA ACTGTGTGGG CCAACTCTGG ATGAGCGGTT TTTTAAGCTG ATAAGTACAG GTAATCAGTC TGCTGTGAAG TTGGCATTAC AAGCTATGTC TACCCTCAAC GAGGTTTGCT ACGATCCAGT AAGGCTTCTG AAAGCAAAAG TGGACGAGAT CAAGAAAGTG GCACCACCTG CAAACAAGCT CGAGAAGGGG AAGGCATGGA TACATCGCCT TCTTGTGACT CCCACCAAAG TCTACTGCCT GGGACCGGAG GTGGAACAAT CAAATCGTAT CATTAGGCAA CATCAAGATT ATACTAGTCA TTTCCTGCGA GTCAATTTTG TTGATGAGAA CTGCAGTCCT CTCACAAGCA CCGTACTCAC ATCAGATATG CACAGTGGTC ATTCCGATGT ATACAGGAGG GTCAAAGAAG TACTAAAAGA GGGCATCTTC ATAGGAAGCA GAAAATATGA ATTTTTGGCA TTTTCCGCTA GTCAGCTGCG AGACAGCCAG ATATGGATGT TCGCTGAGAA GCTTGCATCG ACAGGAACTG AAAAGCCTGC TGTTACTGCA GATTCTATAA GAACTCAGAT GGGAGATTTT TCTCAGATTC GCAACGTAGC CAAATGTGCA GCACGTATGG GTCAGTGCTT CTCTTCTTCC ATTGAGACGA GGAAAGTGCT TCCGCTTCAG GTGAAGAAAA TTAAGGACAT AACTATCAAG ACGGACGGCG TTACTTATTG CTTCTCAGAT GGTATCGGGA AAATATCGCA AGATTTTGCC CGCAGTATAG CGGGTGCCTG TTGTCCGTCT GGAAGAGTCC CCTCGGCTTT CCAAATCCGT TATGGAGGTT ACAAAGGAGT GGTTGCGGTC GATCCTCGTG CCTCATCTTC GTTCAAGTTG TATCTTAGAC CTAGTATGCA CAAATTTGAC TCTCCCCACA TGAGTCTAGA GGTTCTTGAC TGGACCCGTG TCTTGCCCTG CTTTCTGAAC CGTCAGGTCA TATGCCTGTT GTCGACTTTG GGAGTGAAAG ACCTATCGTT CATACATCTG CAGAGTCAGA TGATTTCAGA ATTGGAGAAG GTGGTGGAAG AGGAGGGTGG CCATGTGGCC AGGAGAGTCC TTGGCTGTAG AGAAAATAGA GCCGGTTCGA TCGCTCTACA AATGCTTGAA AACGGATACA CAGCGAAGAC TGAGCCTCTG TTGAAGCGAC TGCTGTGTGT GTTCAGAGAA GCCGAACTGC AGGAATTGAA GACCAAAGCA AAGATATTTG TGCCCAAGGG AAGGTGTCTG ATGGGCTGTC TTGATGAAAC CAAGACTCTC AAGTATGGGG AAGTTTTTGT CCAGATATCT GCAGCCTCGA AAGTTGGCGA TATGGGGCAT CATGCCCAAG GGCTTCACGA GGACACCTGT ATTGTGACTT CGAAGGTTTT TGTCGCCAAA AATCCTTGTT TACATCCAGG AGATGTGAGG GTGCTGCAAG CAGTCGATGT TGCGAATCTA CATCACATGG TGAACTGTGT TGTGTTCCCT CAGCTCGGTC CAAAGTAAGA ACTAAATCTT GAGGTACTTT GACGGCATGT GATGTTGTAG AAAGCGTCAT CAGGTGTGTA TGTAACATCT TTCCTGTACA CTCAGTAGAG TACATCGTGC TTTGAGTTTG ACAAACACAG GTAGCGACAT TGTGGAGTTG GCAACTTCTC TACATTGCTG CACCTCTCAA CCATCCCTTA TTGACTGTTA TGATTGTAGA TCGCGATCAT ATTCTAGATT TTCTTACCAA TGAGGTTGTT GTGGATGTGT GACGTACACA AAGACCTCAT CCGCATGAGT GCTCTGGAAG CGATCTGGAT GGTGATATTT ACATGGTGAG CTGGGATGCG AGTTTGATTC CGCCAACTGT AGAAGTCCCC ATGGACTATT CACCACCTGC AGCAACCAGT CTCGATCACC CTGTCACAAT TGAGGTACCC TTCAGCTCTG TAACCTCTAT CTGATAAATG CTCACCGCTG GCCATCCAGT CAATGTGCTG TACATGGATT GACACGCCAT GAGGAATATA TGAGTTGTAC CACTGAGAGA GTTTGGTCCT GGTGGGATTC AGATTTCTTC AGTATAGTTA TCATGGGCTA CTTGATTCTA ACAATGATAA TTGATTACTG AATGTCCGTT CACTTATCAA GAAACTCGAT TGTTCCAAGT AAAATGAAAT GCTTGGATTT GAGGACTCTC TGACACTTAT TGTCTCGATT CTGGTATAAA TTTTTCACGT TGTTTAGTAA AAAGTACCAG GACTTATCAA CAATGTGCAG GAGATACAGG ATTTTTTCTT GAATTATATG ACGAATGATA ACTTGGGTAT CATCGCAAAT GCTCATGTTG TCCATGCTGA CAAGGAGATC GATAAGGCTC GCAGTGAAAA GTGCTACGAG CTCGCTCATC TTGCCTCCCT AGCGGTCGAC TACCCTAAGA CAGGAGTACC GGCCCGTATA CCGATGGGAC TTCGGCCCAG GGAGTATCCA GATTTTATGG AGAAGGAACA TAAGGTAACA TATATATCCA GCGGCATATT AGGGAAGCTG TATCGATATA TAAAGGATTA TCCTTCGATC CCCGAATGCT CGAAAGGCTT CGTCTCTCGT GATGATTGTA TTAAGTTCTT TGACAAGGAT CTGAAGATCT CAGGATACGA AAAACACATC GAGAGTGCCT TATTGCATAA AAATATTTAT GACATGAAGC TGATACAGCT GATGAACCAT TACGGTATAC GGGATGAAGC GGAGATCATG GGTGGTCATG TGATATCTTT ATCGAGAATT TTTGCGAGAA AGCAGATGGA CGTTCTCCCC AAGGTTCGTA TGGCCTTCGA AGTTTTGAAG CACGAGGCAA GGTCTTGGTT TTATGCGCGA CGTTTGGAAA AGTCGGAAGC TGATGCAAAG GCCTCAGCTT GGTATTACGT TACCTACCAC GAAGACCACT ACGGCTATGA TGAAAAGTTT TCCAAAGTTA CTAAAACTAA AATCCATTTA TTGAGTTTTC CTTGGGTAGT TGCGGACTTG CTTTTCGCTT TGAAGCAAAA AACAAAGAAA CTAGACGACG GCATCTTTAG AACAGTAGAA AAGCATAGGA AGACCCCGAT ACCACCTGTA TCTGGTTTTG AAAAAGTTTC ATCCGCACAG GCTGGCCTTC CCAGTAAACG ACAGAAACGG TGATAGGTAG CAATGACGGA TTGGAGATTT TTTAGCGATG TAAGGCTTTG ACACTTCAGC TGTTAGTGAT GGAAATGAAT |
mRNA UTR + CDS |
| >Mp1g24060.1 CATCCTACGT AGTCGAACTC GATAATTCTG ATTTGCCCCA AGATATTTCA TCAGTCCTTT ACCTGACGGG AATCTTCAGC CCAGTTCCTA GAATGTTTAG TATAGAGAAA GGAGTTCCAT ACGCTGCGTC TCAGGTGGTG GTGCCCATGG TCAACCCTGA AAACTTCAGG GTTCCTTTTG ATGTCCTATA TAAGGTAAAT AATTTGATTC AGTTCAACAA ACTGTGTGGG CCAACTCTGG ATGAGCGGTT TTTTAAGCTG ATAAGTACAG GTAATCAGTC TGCTGTGAAG TTGGCATTAC AAGCTATGTC TACCCTCAAC GAGGTTTGCT ACGATCCAGT AAGGCTTCTG AAAGCAAAAG TGGACGAGAT CAAGAAAGTG GCACCACCTG CAAACAAGCT CGAGAAGGGG AAGGCATGGA TACATCGCCT TCTTGTGACT CCCACCAAAG TCTACTGCCT GGGACCGGAG GTGGAACAAT CAAATCGTAT CATTAGGCAA CATCAAGATT ATACTAGTCA TTTCCTGCGA GTCAATTTTG TTGATGAGAA CTGCAGTCCT CTCACAAGCA CCGTACTCAC ATCAGATATG CACAGTGGTC ATTCCGATGT ATACAGGAGG GTCAAAGAAG TACTAAAAGA GGGCATCTTC ATAGGAAGCA GAAAATATGA ATTTTTGGCA TTTTCCGCTA GTCAGCTGCG AGACAGCCAG ATATGGATGT TCGCTGAGAA GCTTGCATCG ACAGGAACTG AAAAGCCTGC TGTTACTGCA GATTCTATAA GAACTCAGAT GGGAGATTTT TCTCAGATTC GCAACGTAGC CAAATGTGCA GCACGTATGG GTCAGTGCTT CTCTTCTTCC ATTGAGACGA GGAAAGTGCT TCCGCTTCAG GTGAAGAAAA TTAAGGACAT AACTATCAAG ACGGACGGCG TTACTTATTG CTTCTCAGAT GGTATCGGGA AAATATCGCA AGATTTTGCC CGCAGTATAG CGGGTGCCTG TTGTCCGTCT GGAAGAGTCC CCTCGGCTTT CCAAATCCGT TATGGAGGTT ACAAAGGAGT GGTTGCGGTC GATCCTCGTG CCTCATCTTC GTTCAAGTTG TATCTTAGAC CTAGTATGCA CAAATTTGAC TCTCCCCACA TGAGTCTAGA GGTTCTTGAC TGGACCCGTG TCTTGCCCTG CTTTCTGAAC CGTCAGGTCA TATGCCTGTT GTCGACTTTG GGAGTGAAAG ACCTATCGTT CATACATCTG CAGAGTCAGA TGATTTCAGA ATTGGAGAAG GTGGTGGAAG AGGAGGGTGG CCATGTGGCC AGGAGAGTCC TTGGCTGTAG AGAAAATAGA GCCGGTTCGA TCGCTCTACA AATGCTTGAA AACGGATACA CAGCGAAGAC TGAGCCTCTG TTGAAGCGAC TGCTGTGTGT GTTCAGAGAA GCCGAACTGC AGGAATTGAA GACCAAAGCA AAGATATTTG TGCCCAAGGG AAGGTGTCTG ATGGGCTGTC TTGATGAAAC CAAGACTCTC AAGTATGGGG AAGTTTTTGT CCAGATATCT GCAGCCTCGA AAGTTGGCGA TATGGGGCAT CATGCCCAAG GGCTTCACGA GGACACCTGT ATTGTGACTT CGAAGGTTTT TGTCGCCAAA AATCCTTGTT TACATCCAGG AGATGTGAGG GTGCTGCAAG CAGTCGATGT TGCGAATCTA CATCACATGG TGAACTGTGT TGTGTTCCCT CAGCTCGGTC CAAAACCTCA TCCGCATGAG TGCTCTGGAA GCGATCTGGA TGGTGATATT TACATGGTGA GCTGGGATGC GAGTTTGATT CCGCCAACTG TAGAAGTCCC CATGGACTAT TCACCACCTG CAGCAACCAG TCTCGATCAC CCTGTCACAA TTGAGGAGAT ACAGGATTTT TTCTTGAATT ATATGACGAA TGATAACTTG GGTATCATCG CAAATGCTCA TGTTGTCCAT GCTGACAAGG AGATCGATAA GGCTCGCAGT GAAAAGTGCT ACGAGCTCGC TCATCTTGCC TCCCTAGCGG TCGACTACCC TAAGACAGGA GTACCGGCCC GTATACCGAT GGGACTTCGG CCCAGGGAGT ATCCAGATTT TATGGAGAAG GAACATAAGG TAACATATAT ATCCAGCGGC ATATTAGGGA AGCTGTATCG ATATATAAAG GATTATCCTT CGATCCCCGA ATGCTCGAAA GGCTTCGTCT CTCGTGATGA TTGTATTAAG TTCTTTGACA AGGATCTGAA GATCTCAGGA TACGAAAAAC ACATCGAGAG TGCCTTATTG CATAAAAATA TTTATGACAT GAAGCTGATA CAGCTGATGA ACCATTACGG TATACGGGAT GAAGCGGAGA TCATGGGTGG TCATGTGATA TCTTTATCGA GAATTTTTGC GAGAAAGCAG ATGGACGTTC TCCCCAAGGT TCGTATGGCC TTCGAAGTTT TGAAGCACGA GGCAAGGTCT TGGTTTTATG CGCGACGTTT GGAAAAGTCG GAAGCTGATG CAAAGGCCTC AGCTTGGTAT TACGTTACCT ACCACGAAGA CCACTACGGC TATGATGAAA AGTTTTCCAA AGTTACTAAA ACTAAAATCC ATTTATTGAG TTTTCCTTGG GTAGTTGCGG ACTTGCTTTT CGCTTTGAAG CAAAAAACAA AGAAACTAGA CGACGGCATC TTTAGAACAG TAGAAAAGCA TAGGAAGACC CCGATACCAC CTGTATCTGG TTTTGAAAAA GTTTCATCCG CACAGGCTGG CCTTCCCAGT AAACGACAGA AACGGTGATA GGTAGCAATG ACGGATTGGA GATTTTTTAG CGATGTAAGG CTTTGACACT TCAGCTGTTA GTGATGGAAA TGAAT |
CDS |
| >Mp1g24060.1 ATGTTTAGTA TAGAGAAAGG AGTTCCATAC GCTGCGTCTC AGGTGGTGGT GCCCATGGTC AACCCTGAAA ACTTCAGGGT TCCTTTTGAT GTCCTATATA AGGTAAATAA TTTGATTCAG TTCAACAAAC TGTGTGGGCC AACTCTGGAT GAGCGGTTTT TTAAGCTGAT AAGTACAGGT AATCAGTCTG CTGTGAAGTT GGCATTACAA GCTATGTCTA CCCTCAACGA GGTTTGCTAC GATCCAGTAA GGCTTCTGAA AGCAAAAGTG GACGAGATCA AGAAAGTGGC ACCACCTGCA AACAAGCTCG AGAAGGGGAA GGCATGGATA CATCGCCTTC TTGTGACTCC CACCAAAGTC TACTGCCTGG GACCGGAGGT GGAACAATCA AATCGTATCA TTAGGCAACA TCAAGATTAT ACTAGTCATT TCCTGCGAGT CAATTTTGTT GATGAGAACT GCAGTCCTCT CACAAGCACC GTACTCACAT CAGATATGCA CAGTGGTCAT TCCGATGTAT ACAGGAGGGT CAAAGAAGTA CTAAAAGAGG GCATCTTCAT AGGAAGCAGA AAATATGAAT TTTTGGCATT TTCCGCTAGT CAGCTGCGAG ACAGCCAGAT ATGGATGTTC GCTGAGAAGC TTGCATCGAC AGGAACTGAA AAGCCTGCTG TTACTGCAGA TTCTATAAGA ACTCAGATGG GAGATTTTTC TCAGATTCGC AACGTAGCCA AATGTGCAGC ACGTATGGGT CAGTGCTTCT CTTCTTCCAT TGAGACGAGG AAAGTGCTTC CGCTTCAGGT GAAGAAAATT AAGGACATAA CTATCAAGAC GGACGGCGTT ACTTATTGCT TCTCAGATGG TATCGGGAAA ATATCGCAAG ATTTTGCCCG CAGTATAGCG GGTGCCTGTT GTCCGTCTGG AAGAGTCCCC TCGGCTTTCC AAATCCGTTA TGGAGGTTAC AAAGGAGTGG TTGCGGTCGA TCCTCGTGCC TCATCTTCGT TCAAGTTGTA TCTTAGACCT AGTATGCACA AATTTGACTC TCCCCACATG AGTCTAGAGG TTCTTGACTG GACCCGTGTC TTGCCCTGCT TTCTGAACCG TCAGGTCATA TGCCTGTTGT CGACTTTGGG AGTGAAAGAC CTATCGTTCA TACATCTGCA GAGTCAGATG ATTTCAGAAT TGGAGAAGGT GGTGGAAGAG GAGGGTGGCC ATGTGGCCAG GAGAGTCCTT GGCTGTAGAG AAAATAGAGC CGGTTCGATC GCTCTACAAA TGCTTGAAAA CGGATACACA GCGAAGACTG AGCCTCTGTT GAAGCGACTG CTGTGTGTGT TCAGAGAAGC CGAACTGCAG GAATTGAAGA CCAAAGCAAA GATATTTGTG CCCAAGGGAA GGTGTCTGAT GGGCTGTCTT GATGAAACCA AGACTCTCAA GTATGGGGAA GTTTTTGTCC AGATATCTGC AGCCTCGAAA GTTGGCGATA TGGGGCATCA TGCCCAAGGG CTTCACGAGG ACACCTGTAT TGTGACTTCG AAGGTTTTTG TCGCCAAAAA TCCTTGTTTA CATCCAGGAG ATGTGAGGGT GCTGCAAGCA GTCGATGTTG CGAATCTACA TCACATGGTG AACTGTGTTG TGTTCCCTCA GCTCGGTCCA AAACCTCATC CGCATGAGTG CTCTGGAAGC GATCTGGATG GTGATATTTA CATGGTGAGC TGGGATGCGA GTTTGATTCC GCCAACTGTA GAAGTCCCCA TGGACTATTC ACCACCTGCA GCAACCAGTC TCGATCACCC TGTCACAATT GAGGAGATAC AGGATTTTTT CTTGAATTAT ATGACGAATG ATAACTTGGG TATCATCGCA AATGCTCATG TTGTCCATGC TGACAAGGAG ATCGATAAGG CTCGCAGTGA AAAGTGCTAC GAGCTCGCTC ATCTTGCCTC CCTAGCGGTC GACTACCCTA AGACAGGAGT ACCGGCCCGT ATACCGATGG GACTTCGGCC CAGGGAGTAT CCAGATTTTA TGGAGAAGGA ACATAAGGTA ACATATATAT CCAGCGGCAT ATTAGGGAAG CTGTATCGAT ATATAAAGGA TTATCCTTCG ATCCCCGAAT GCTCGAAAGG CTTCGTCTCT CGTGATGATT GTATTAAGTT CTTTGACAAG GATCTGAAGA TCTCAGGATA CGAAAAACAC ATCGAGAGTG CCTTATTGCA TAAAAATATT TATGACATGA AGCTGATACA GCTGATGAAC CATTACGGTA TACGGGATGA AGCGGAGATC ATGGGTGGTC ATGTGATATC TTTATCGAGA ATTTTTGCGA GAAAGCAGAT GGACGTTCTC CCCAAGGTTC GTATGGCCTT CGAAGTTTTG AAGCACGAGG CAAGGTCTTG GTTTTATGCG CGACGTTTGG AAAAGTCGGA AGCTGATGCA AAGGCCTCAG CTTGGTATTA CGTTACCTAC CACGAAGACC ACTACGGCTA TGATGAAAAG TTTTCCAAAG TTACTAAAAC TAAAATCCAT TTATTGAGTT TTCCTTGGGT AGTTGCGGAC TTGCTTTTCG CTTTGAAGCA AAAAACAAAG AAACTAGACG ACGGCATCTT TAGAACAGTA GAAAAGCATA GGAAGACCCC GATACCACCT GTATCTGGTT TTGAAAAAGT TTCATCCGCA CAGGCTGGCC TTCCCAGTAA ACGACAGAAA CGGTGA |
Protein |
| >Mp1g24060.1 MFSIEKGVPY AASQVVVPMV NPENFRVPFD VLYKVNNLIQ FNKLCGPTLD ERFFKLISTG NQSAVKLALQ AMSTLNEVCY DPVRLLKAKV DEIKKVAPPA NKLEKGKAWI HRLLVTPTKV YCLGPEVEQS NRIIRQHQDY TSHFLRVNFV DENCSPLTST VLTSDMHSGH SDVYRRVKEV LKEGIFIGSR KYEFLAFSAS QLRDSQIWMF AEKLASTGTE KPAVTADSIR TQMGDFSQIR NVAKCAARMG QCFSSSIETR KVLPLQVKKI KDITIKTDGV TYCFSDGIGK ISQDFARSIA GACCPSGRVP SAFQIRYGGY KGVVAVDPRA SSSFKLYLRP SMHKFDSPHM SLEVLDWTRV LPCFLNRQVI CLLSTLGVKD LSFIHLQSQM ISELEKVVEE EGGHVARRVL GCRENRAGSI ALQMLENGYT AKTEPLLKRL LCVFREAELQ ELKTKAKIFV PKGRCLMGCL DETKTLKYGE VFVQISAASK VGDMGHHAQG LHEDTCIVTS KVFVAKNPCL HPGDVRVLQA VDVANLHHMV NCVVFPQLGP KPHPHECSGS DLDGDIYMVS WDASLIPPTV EVPMDYSPPA ATSLDHPVTI EEIQDFFLNY MTNDNLGIIA NAHVVHADKE IDKARSEKCY ELAHLASLAV DYPKTGVPAR IPMGLRPREY PDFMEKEHKV TYISSGILGK LYRYIKDYPS IPECSKGFVS RDDCIKFFDK DLKISGYEKH IESALLHKNI YDMKLIQLMN HYGIRDEAEI MGGHVISLSR IFARKQMDVL PKVRMAFEVL KHEARSWFYA RRLEKSEADA KASAWYYVTY HEDHYGYDEK FSKVTKTKIH LLSFPWVVAD LLFALKQKTK KLDDGIFRTV EKHRKTPIPP VSGFEKVSSA QAGLPSKRQK R |