Mp1g26020



Description

Annotation

Database ID Description
FunFam G3DSA:1.10.287.70:FF:000094 Two pore calcium channel protein 1
SUPERFAMILY SSF47473 EF-hand
FunFam G3DSA:1.10.287.70:FF:000129 Two pore calcium channel protein 1
SUPERFAMILY SSF81324 Voltage-gated potassium channels
MobiDBLite mobidb-lite consensus disorder prediction
FunFam G3DSA:1.20.120.350:FF:000055 Two pore calcium channel protein 1
Gene3D G3DSA:1.10.287.70 -
Gene3D G3DSA:1.20.120.350 -
Gene3D G3DSA:1.10.238.10 -
PANTHER PTHR46988 TWO PORE CALCIUM CHANNEL PROTEIN 1
Pfam PF00520 Ion transport protein
KEGG K16900 two pore calcium channel protein, plant
KOG KOG2301 Voltage-gated Ca2+ channels, alpha1 subunits; C-term missing; [PT]
MapolyID Mapoly0002s0274 -
GO GO:0055085 transmembrane transport
GO GO:0005216 monoatomic ion channel activity
GO GO:0006816 calcium ion transport
GO GO:0005774 vacuolar membrane
GO GO:0005245 voltage-gated calcium channel activity
GO GO:0006811 monoatomic ion transport
GO GO:0000325 plant-type vacuole
GO GO:0016020 membrane

Nomenclature

Gene symbol Product Transcript ID Status
MpTPC1 Channels Provisional

Associated Literature (AI-based literature mining, Beta-version)

Two-pore channel type 1 (Mp1g26020); vascular-plant-like TPC; functionally analyzed (slow vacuolar/SV-type Ca2+-permeable channel).

1 core 1 peripheral

Hashimoto, K., et al. (2022) · Plant & Cell Physiology  research experimental subject
Two-pore channel type 1 (Mp1g26020); vascular-plant-like TPC; functionally analyzed (slow vacuolar/SV-type Ca2+-permeable channel).
Watanabe, K., et al. (2024) · Plant & Cell Physiology  research experimental comparator
Two-pore channel type1 (SV-channel); shown NOT required for long-distance signal propagation.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g26020.1 chr1:27300636..27310420 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g26020 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g26020 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.