Mp1g27780



Description

Annotation

Database ID Description
PANTHER PTHR24096 LONG-CHAIN-FATTY-ACID--COA LIGASE
SUPERFAMILY SSF56801 Acetyl-CoA synthetase-like
FunFam G3DSA:3.40.50.12780:FF:000003 Long-chain-fatty-acid--CoA ligase FadD
Pfam PF13193 AMP-binding enzyme C-terminal domain
Gene3D G3DSA:3.30.300.30 -
FunFam G3DSA:3.30.300.30:FF:000007 4-coumarate--CoA ligase 2
Gene3D G3DSA:3.40.50.12780 -
CDD cd05904 4CL
Pfam PF00501 AMP-binding enzyme
KEGG K01904 4-coumarate--CoA ligase [EC:6.2.1.12]
KOG KOG1176 Acyl-CoA synthetase; [I]
MapolyID Mapoly0002s0100 -
GO GO:0016405 CoA-ligase activity

Nomenclature

Gene symbol Product Transcript ID Status
Mp4CL1 Acyl-CoA synthase, Secondary metabolism enzyme Provisional
This is a provisional entry. If you want to update the entry, please contact the administrator.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g27780.1 chr1:28836128..28841611 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g27780.2 chr1:28836196..28841603 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g27780 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g27780 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.