Mp1g27830



Description

Annotation

Database ID Description
CDD cd00051 EFh
CDD cd05399 NT_Rel-Spo_like
FunFam G3DSA:3.30.460.10:FF:000025 probable GTP diphosphokinase CRSH, chloroplastic
Gene3D G3DSA:1.10.238.10 -
Gene3D G3DSA:1.10.3210.10 Hypothetical protein af1432
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain
Gene3D G3DSA:3.30.460.10 Beta Polymerase, domain 2
KOG KOG0495 HAT repeat protein; N-term missing; C-term missing; [A]
KOG KOG1157 Predicted guanosine polyphosphate pyrophosphohydrolase/synthase; [T]
KOG KOG4162 Predicted calmodulin-binding protein; N-term missing; [T]
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR21262 GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE
Pfam PF04607 Region found in RelA / SpoT proteins
Pfam PF13328 HD domain
Pfam PF13432 Tetratricopeptide repeat
Pfam PF13499 EF-hand domain pair
ProSitePatterns PS00018 EF-hand calcium-binding domain.
ProSiteProfiles PS50222 EF-hand calcium-binding domain profile.
ProSiteProfiles PS51831 HD domain profile.
SMART SM00028 tpr_5
SMART SM00054 efh_1
SMART SM00386 hat_new_1
SMART SM00954 RelA_SpoT_2
SUPERFAMILY SSF109604 HD-domain/PDEase-like
SUPERFAMILY SSF47473 EF-hand
SUPERFAMILY SSF81301 Nucleotidyltransferase
SUPERFAMILY SSF81901 HCP-like
GO GO:0005509 calcium ion binding
GO GO:0006396 RNA processing
GO GO:0005515 protein binding
GO GO:0015969 guanosine tetraphosphate metabolic process
MapolyID Mapoly0002s0095 -

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining)

UVB-induced DEG, probable chloroplastic GTP diphosphokinase (annotation).

0 core 1 peripheral

Clayton, W. A., et al. (2018) · Plant Journal  research experimental background
UVB-induced DEG, probable chloroplastic GTP diphosphokinase (annotation).

Transcript models

Transcript ID Location Sequences Extract region
Mp1g27830.1 chr1:28865211..28873281 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g27830 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g27830 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.