Mp1g29050



Description

Annotation

Database ID Description
PRINTS PR00364 Disease resistance protein signature
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor
SUPERFAMILY SSF53474 alpha/beta-Hydrolases
Pfam PF00931 NB-ARC domain
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Coils Coil Coil
PANTHER PTHR36766 PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8
Gene3D G3DSA:3.40.50.1820 alpha/beta hydrolase
Gene3D G3DSA:1.10.8.430 -
SUPERFAMILY SSF52058 L domain-like
Gene3D G3DSA:3.40.50.300 -
KEGG K23504 protein SERAC1
KOG KOG4658 Apoptotic ATPase; N-term missing; [T]
KOG KOG2029 Uncharacterized conserved protein; N-term missing; [S]
MapolyID Mapoly0107s0021 -
GO GO:0043531 ADP binding
GO GO:0050832 defense response to fungus

Nomenclature

Gene symbol Product Transcript ID Status
MpNBS-LRR3 NBS genes Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp1g29050.1 chr1:30462457..30469287 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g29050 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g29050 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.