Mp1g29090



Description

Annotation

Database ID Description
KEGG K06636 structural maintenance of chromosome 1
KOG KOG0018 Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1); [D]
Coils Coil Coil
CDD cd03275 ABC_SMC1_euk
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
PANTHER PTHR18937 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF75553 Smc hinge domain
PIRSF PIRSF005719 SMC
SMART SM00968 SMC_hinge_2
Gene3D G3DSA:3.40.50.300 -
Pfam PF06470 SMC proteins Flexible Hinge Domain
Gene3D G3DSA:1.20.1060.20 -
Pfam PF02463 RecF/RecN/SMC N terminal domain
PANTHER PTHR18937:SF12 STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN
Gene3D G3DSA:3.30.70.1620 -
MapolyID Mapoly0107s0024 -

Nomenclature

Gene symbol Product Transcript ID Status
MpSMC1 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g29090.1 chr1:29593468..29605961 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g29090.2 chr1:29593468..29605961 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.