Mp1g29160



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR47712 OS09G0555300 PROTEIN
Gene3D G3DSA:2.120.10.80 -
SMART SM00612 kelc_smart
SMART SM00256 fbox_2
Pfam PF01344 Kelch motif
SUPERFAMILY SSF81383 F-box domain
Pfam PF00646 F-box domain
SUPERFAMILY SSF50965 Galactose oxidase, central domain
Gene3D G3DSA:1.20.1280.50 -
CDD cd22157 F-box_AtFBW1-like
KOG KOG4441 Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes; N-term missing; [TR]
MapolyID Mapoly0107s0031 -
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpCFK1 F-BOX Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp1g29160.1 chr1:30575176..30580120 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g29160 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g29160 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.