Mp1g29330



Description

Annotation

Database ID Description
PANTHER PTHR48017 OS05G0424000 PROTEIN-RELATED
Pfam PF01490 Transmembrane amino acid transporter protein
KEGG K13946 auxin influx carrier (AUX1 LAX family)
KOG KOG1303 Amino acid transporters; [E]
MapolyID Mapoly0107s0048 -
GO GO:0003333 amino acid transmembrane transport
GO GO:0015171 amino acid transmembrane transporter activity
GO GO:0016020 membrane

Nomenclature

Gene symbol Product Transcript ID Status
MpAUX1 Encodes auxin influx transporter Published

Associated Literature (AI-based literature mining, Beta-version)

Encodes auxin influx transporter; Genome paper Mapoly0107s0048 (from nomenclature)

0 core 1 peripheral

Liu, W., et al. (2024a) · Cell Reports  research experimental background
Auxin transporter AUXIN RESISTANT1 (MpAUX1); expression examined in MpANT meristem study (Fig 2B,2E).

Transcript models

Transcript ID Location Sequences Extract region
Mp1g29330.1 chr1:30772625..30778410 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g29330 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g29330 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.