Mp2g05730



Description

Annotation

Database ID Description
PIRSF PIRSF009360 UCP009360
CDD cd11299 O-FucT_plant
FunFam G3DSA:3.40.50.11350:FF:000011 O-fucosyltransferase 28
Pfam PF10250 GDP-fucose protein O-fucosyltransferase
PANTHER PTHR31741 OS02G0726500 PROTEIN-RELATED
KEGG K23280 rhamnogalacturonan I rhamnosyltransferase [EC:2.4.1.351]
MapolyID Mapoly0021s0029 -
GO GO:0005737 cytoplasm

Nomenclature

Gene symbol Product Transcript ID Status
MpRRT4 RG-I rhamnosyltransferases Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp2g05730.1 chr2:6448552..6457105 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g05730 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g05730 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.