Mp2g11140



Description

Annotation

Database ID Description
SMART SM01255 KNOX1_2
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF03790 KNOX1 domain
MapolyID Mapoly0023s0081 -
GO GO:0005634 nucleus
GO GO:0003677 DNA binding

Nomenclature

Gene symbol Product Transcript ID Status
MpHD7 transcription factor, HD, homeodomain protein Published
MpKNOX1b transcription factor, HD, homeodomain protein (lacks homeodomain) Published

Associated Literature (AI-based literature mining, Beta-version)

transcription factor, HD, homeodomain protein (lacks homeodomain); Genome paper KNOX1: Mapoly0175s0020 KNOX1a: Mapoly0174s0007 (lacks homeodomain) KNOX1b: Mapoly0023s0081 (lacks homeodomain) (from nomenclature)

1 core 0 peripheral

Dierschke, T., et al. (2021) · eLife  research experimental subject
Antheridia/sperm-expressed MpKNOX1 isoform lacking a homeodomain while retaining the MEINOX domain.

Transcript models

Transcript ID Location Sequences Extract region
Mp2g11140.1 chr2:12147130..12153008 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g11140.2 chr2:12147130..12153008 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g11140 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g11140 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.