Mp2g16530



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:3.40.50.300 -
SMART SM00487 ultradead3
Pfam PF00271 Helicase conserved C-terminal domain
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
CDD cd00268 DEADc
CDD cd18787 SF2_C_DEAD
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Pfam PF00270 DEAD/DEAH box helicase
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
SMART SM00490 helicmild6
PANTHER PTHR47963 DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL
KOG KOG0327 Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases; [J]
MapolyID Mapoly0122s0011 -
GO GO:0003724 RNA helicase activity
GO GO:0003723 RNA binding
GO GO:0003676 nucleic acid binding
GO GO:0005524 ATP binding

Nomenclature

Gene symbol Product Transcript ID Status
MpISE1 Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp2g16530.1 chr2:18739040..18743809 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g16530.2 chr2:18739040..18743809 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g16530 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g16530 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.