Mp2g16700



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
FunFam G3DSA:3.40.50.300:FF:000504 ABC transporter G family member 11
Pfam PF01061 ABC-2 type transporter
ProSitePatterns PS00211 ABC transporters family signature.
PANTHER PTHR48042 ABC TRANSPORTER G FAMILY MEMBER 11
SMART SM00382 AAA_5
Gene3D G3DSA:3.40.50.300 -
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
ProSiteProfiles PS50893 ATP-binding cassette, ABC transporter-type domain profile.
Pfam PF00005 ABC transporter
KEGG K05681 ATP-binding cassette, subfamily G (WHITE), member 2
KOG KOG0061 Transporter, ABC superfamily (Breast cancer resistance protein); [Q]
MapolyID Mapoly0109s0011 -
GO GO:0016887 ATP hydrolysis activity
GO GO:0005524 ATP binding
GO GO:0016020 membrane
GO GO:0140359 ABC-type transporter activity

Nomenclature

Gene symbol Product Transcript ID Status
MpABCG2 ABC transporters Provisional

Associated Literature (AI-based literature mining, Beta-version)

ABC transporters (from nomenclature)

0 core 1 peripheral

Xu, B., et al. (2021) · New Phytologist  research experimental background
ABCG transporter; cuticle DEG.

Transcript models

Transcript ID Location Sequences Extract region
Mp2g16700.1 chr2:19184477..19190607 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g16700 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g16700 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.