Mp2g18020



Description

Annotation

Database ID Description
Pfam PF00005 ABC transporter
MobiDBLite mobidb-lite consensus disorder prediction
ProSitePatterns PS00211 ABC transporters family signature.
SUPERFAMILY SSF90123 ABC transporter transmembrane region
ProSiteProfiles PS50893 ATP-binding cassette, ABC transporter-type domain profile.
PANTHER PTHR11384 ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER
CDD cd03223 ABCD_peroxisomal_ALDP
ProSiteProfiles PS50929 ABC transporter integral membrane type-1 fused domain profile.
Gene3D G3DSA:3.40.50.300 -
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Pfam PF06472 ABC transporter transmembrane region 2
Gene3D G3DSA:1.20.1560.10 ABC transporter type 1, transmembrane domain
SMART SM00382 AAA_5
KEGG K02471 vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
KOG KOG0060 Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis); [IR]
MapolyID Mapoly0094s0070 -
GO GO:0055085 transmembrane transport
GO GO:0140359 ABC-type transporter activity
GO GO:0005524 ATP binding
GO GO:0016887 ATP hydrolysis activity
GO GO:0016020 membrane

Nomenclature

Gene symbol Product Transcript ID Status
MpABC27 ABC transporter Provisional
This is a provisional entry. If you want to update the entry, please contact the administrator.

Transcript models

Transcript ID Location Sequences Extract region
Mp2g18020.1 chr2:20886714..20892425 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g18020 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g18020 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.