Mp2g19190



Description

Annotation

Database ID Description
PIRSF PIRSF037913 HDAC_I_euk
MobiDBLite mobidb-lite consensus disorder prediction
PRINTS PR01270 Histone deacetylase superfamily signature
Pfam PF00850 Histone deacetylase domain
PRINTS PR01271 Histone deacetylase signature
FunFam G3DSA:3.40.800.20:FF:000008 Histone deacetylase
PANTHER PTHR10625 HISTONE DEACETYLASE HDAC1-RELATED
Gene3D G3DSA:3.40.800.20 Histone deacetylase domain
SUPERFAMILY SSF52768 Arginase/deacetylase
KEGG K06067 histone deacetylase 1/2 [EC:3.5.1.98]
KOG KOG1342 Histone deacetylase complex, catalytic component RPD3; [B]
MapolyID Mapoly0128s0032 -
GO GO:0005634 nucleus
GO GO:0016575 obsolete histone deacetylation
GO GO:0004407 histone deacetylase activity
GO GO:0006357 regulation of transcription by RNA polymerase II

Nomenclature

Gene symbol Product Transcript ID Status
MpHDAC5 Chromatin related protein Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp2g19190.1 chr2:23306414..23316491 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g19190 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g19190 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.