Mp2g22250



Description

Annotation

Database ID Description
CDD cd10017 B3_DNA
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF00847 AP2 domain
CDD cd00018 AP2
PANTHER PTHR31140 B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3
Gene3D G3DSA:2.40.330.10 -
Pfam PF02362 B3 DNA binding domain
ProSiteProfiles PS51032 AP2/ERF domain profile.
SMART SM00380 rav1_2
Gene3D G3DSA:3.30.730.10 AP2/ERF domain
SMART SM01019 B3_2
Gene3D G3DSA:3.10.20.90 -
SUPERFAMILY SSF54171 DNA-binding domain
FunFam G3DSA:3.30.730.10:FF:000008 AP2 domain-containing protein RAP2.8
SUPERFAMILY SSF101936 DNA-binding pseudobarrel domain
ProSiteProfiles PS50863 B3 DNA-binding domain profile.
KEGG K09287 RAV-like factor
MapolyID Mapoly0072s0102 -
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0003677 DNA binding

Nomenclature

Gene symbol Product Transcript ID Status
MpAP2B3-1 transcription factor, AP2-B3 Published
MpRAV transcription factor, AP2-B3 Provisional

Associated Literature (AI-based literature mining, Beta-version)

Studied as a domain-sharing relative used to probe ARF domain function and evolutionary divergence. MpRAV B3 and PB1 domains were swapped into MpARF1/MpARF3 chimeras for complementation tests, and yeast two-hybrid assays showed MpRAV PB1 strongly self-interacted.

1 core 1 peripheral

Hernández-García, J., et al. (2024a) · Nature Communications  research experimental subject
Studied as a domain-sharing relative used to probe ARF domain function and evolutionary divergence. MpRAV B3 and PB1 domains were swapped into MpARF1/MpARF3 chimeras for complementation tests, and yeast two-hybrid assays showed MpRAV PB1 strongly self-interacted.
Flores-Sandoval, E., et al. (2018b) · Frontiers in Plant Science  research experimental background
RAV-like B3-domain TF listed among enriched DEGs (logFC 1.71, logCPM 3.32) in co-expression analysis.

Transcript models

Transcript ID Location Sequences Extract region
Mp2g22250.1 chr2:27036376..27041915 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g22250 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g22250 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.