Mp2g22490



Description

Annotation

Database ID Description
Pfam PF02535 ZIP Zinc transporter
PANTHER PTHR11040 ZINC/IRON TRANSPORTER
KEGG K14709 solute carrier family 39 (zinc transporter), member 1/2/3
KOG KOG1558 Fe2+/Zn2+ regulated transporter; [P]
MapolyID Mapoly0072s0082 -
GO GO:0055085 transmembrane transport
GO GO:0030001 metal ion transport
GO GO:0046873 metal ion transmembrane transporter activity
GO GO:0005385 zinc ion transmembrane transporter activity
GO GO:0071577 zinc ion transmembrane transport
GO GO:0016020 membrane

Nomenclature

Gene symbol Product Transcript ID Status
MpZIP4 transcription factor, Fe homeostasis protein Provisional

Associated Literature (AI-based literature mining, Beta-version)

transcription factor, Fe homeostasis protein (from nomenclature)

0 core 1 peripheral

Lo, J. C., et al. (2016) · New Phytologist  research experimental background
MpZIP4 ZIP transporter

Transcript models

Transcript ID Location Sequences Extract region
Mp2g22490.1 chr2:27279224..27282368 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g22490.2 chr2:27279219..27282397 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g22490 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g22490 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.