Mp2g25420



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
ProSitePatterns PS00028 Zinc finger C2H2 type domain signature.
ProSiteProfiles PS50103 Zinc finger C3H1-type profile.
PANTHER PTHR13309 NUCLEAR FRAGILE X MENTAL RETARDATION PROTEIN INTERACTING PROTEIN 1
SMART SM00356 c3hfinal6
Coils Coil Coil
SMART SM00355 c2h2final6
Pfam PF10453 FMR1-interacting protein 1 (NUFIP1)
Pfam PF00642 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Gene3D G3DSA:4.10.1000.10 -
SUPERFAMILY SSF90229 CCCH zinc finger
KEGG K23308 nuclear fragile X mental retardation-interacting protein 1
KOG KOG1763 Uncharacterized conserved protein, contains CCCH-type Zn-finger; C-term missing; [R]
MapolyID Mapoly0025s0136 -
GO GO:0000492 box C/D snoRNP assembly
GO GO:0005634 nucleus
GO GO:0046872 metal ion binding

Nomenclature

Gene symbol Product Transcript ID Status
MpC3H11 transcription factor, C3H Provisional
This is a provisional entry. If you want to update the entry, please contact the administrator.

Transcript models

Transcript ID Location Sequences Extract region
Mp2g25420.1 chr2:31400635..31410914 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g25420 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g25420 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.