Mp3g00700



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Coils Coil Coil
SUPERFAMILY SSF57997 Tropomyosin
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
PANTHER PTHR45916 STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5
FunFam G3DSA:3.40.50.300:FF:001301 Structural maintenance of chromosomes 5
Gene3D G3DSA:3.40.50.300 -
Pfam PF02463 RecF/RecN/SMC N terminal domain
KEGG K22803 structural maintenance of chromosomes protein 5
KOG KOG0979 Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily; [BDL]
KOG KOG0018 Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1); N-term missing; C-term missing; [D]
MapolyID Mapoly0007s0066 -
GO GO:0005634 nucleus
GO GO:0030915 Smc5-Smc6 complex
GO GO:0005524 ATP binding
GO GO:0016887 ATP hydrolysis activity
GO GO:0003697 single-stranded DNA binding
GO GO:0006281 DNA repair
GO GO:0000724 double-strand break repair via homologous recombination

Nomenclature

Gene symbol Product Transcript ID Status
MpSMC5 Chromatin related protein Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp3g00700.1 chr3:924098..933609 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp3g00700.2 chr3:922220..933609 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g00700 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g00700 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.