Mp3g00750



Description

Annotation

Database ID Description
Gene3D G3DSA:1.20.120.1810 -
PRINTS PR00046 Major sigma-70 factor signature
SUPERFAMILY SSF88946 Sigma2 domain of RNA polymerase sigma factors
SUPERFAMILY SSF88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
CDD cd06171 Sigma70_r4
NCBIfam TIGR02937 sigma-70 family RNA polymerase sigma factor
Pfam PF04545 Sigma-70, region 4
Gene3D G3DSA:1.10.10.10 -
Coils Coil Coil
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF04539 Sigma-70 region 3
Pfam PF04542 Sigma-70 region 2
PANTHER PTHR30603 RNA POLYMERASE SIGMA FACTOR RPO
MapolyID Mapoly0007s0071 -
GO GO:0006352 DNA-templated transcription initiation
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0006355 regulation of DNA-templated transcription

Nomenclature

Gene symbol Product Transcript ID Status
MpSIGX Similar gene of Arabidopsis plastid RNA polymerase sigma factor genes Published

Transcript models

Transcript ID Location Sequences Extract region
Mp3g00750.1 chr3:1011594..1016871 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g00750 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g00750 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.