Mp3g05770



Description

Annotation

Database ID Description
Pfam PF12490 BCAS3 microtubule associated cell migration factor, C-terminal
SMART SM00320 WD40_4
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:2.130.10.10 -
SUPERFAMILY SSF50978 WD40 repeat-like
PANTHER PTHR13268 BREAST CARCINOMA AMPLIFIED SEQUENCE 3
Pfam PF21034 BCAS3, WD40 repeat
KOG KOG2109 WD40 repeat protein; [R]
MapolyID Mapoly0006s0048 -
GO GO:0042594 response to starvation
GO GO:0005737 cytoplasm
GO GO:0006914 autophagy
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpATG18d Autophagy protein Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp3g05770.1 chr3:6206832..6215956 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g05770 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g05770 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.